BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0005.p
         (154 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311891|ref|YP_003775983.1| spore coat U domain-containing ...   301   1e-83
gi|300311892|ref|YP_003775984.1| signal peptide protein [Herbasp...    72   2e-14
gi|300311888|ref|YP_003775980.1| signal peptide protein [Herbasp...    69   2e-13

>gi|300311891|ref|YP_003775983.1| spore coat U domain-containing
           protein [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score =  301 bits (772), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 153/154 (99%), Positives = 153/154 (99%)

Query: 1   MASAAILALLLVAGTPAGAQQVCSASSSPVSFGLYDPQSSATIDNAGSISVTCQATVSLL 60
           MA AAILALLLVAGTPAGAQQVCSASSSPVSFGLYDPQSSATIDNAGSISVTCQATVSLL
Sbjct: 19  MARAAILALLLVAGTPAGAQQVCSASSSPVSFGLYDPQSSATIDNAGSISVTCQATVSLL 78

Query: 61  MAYTVKLSSGNSGALSQRKMLSGANSLNYQVYTDAARSSIWGDGSSGTSFITDGYLLQVL 120
           MAYTVKLSSGNSGALSQRKMLSGANSLNYQVYTDAARSSIWGDGSSGTSFITDGYLLQVL
Sbjct: 79  MAYTVKLSSGNSGALSQRKMLSGANSLNYQVYTDAARSSIWGDGSSGTSFITDGYLLQVL 138

Query: 121 TPVVKHYTVYGRVPGSQNVKAGSYLDTLTILITY 154
           TPVVKHYTVYGRVPGSQNVKAGSYLDTLTILITY
Sbjct: 139 TPVVKHYTVYGRVPGSQNVKAGSYLDTLTILITY 172


>gi|300311892|ref|YP_003775984.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score = 72.4 bits (176), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 75/135 (55%), Gaps = 16/135 (11%)

Query: 23  CSASSSPVSFGLYDPQSSATIDNAGSISVTCQATVSLLMAYTVKLSSGN-SGA-LSQRKM 80
           C+   S ++FG Y   + A ++  GSI+V C        AY V L +G  +GA +S RKM
Sbjct: 45  CTVVGSSIAFGAY---TQAVVNQTGSITVQCTNGT----AYNVGLDAGTGTGATVSNRKM 97

Query: 81  -LSGANSLNYQVYTDAARSSIWGDGSSGTSFITDGYLLQVLTPVVKHYTVYGRVPGSQNV 139
             SG  +LNY +Y D+ARSS WG      S I    L    + + +  TVYG++P +Q  
Sbjct: 98  SASGGGTLNYALYRDSARSSNWG------STIGTDTLTGTGSGLAQTLTVYGQIPAAQTP 151

Query: 140 KAGSYLDTLTILITY 154
            AGSY DT+T+ +TY
Sbjct: 152 LAGSYSDTVTVTLTY 166


>gi|300311888|ref|YP_003775980.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score = 68.9 bits (167), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 18/136 (13%)

Query: 21  QVCSASSSPVSFGLYDPQSSATIDNAGSISVTCQATVSLLMAYTVKLSSGNSGALSQRKM 80
           Q CS  S+ + FG+Y   SSA   NA  I VTC    S    YTV L  G +G+ + R+M
Sbjct: 40  QQCSVQSAALPFGVYG--SSALQQNA-QIGVTCSNGTS----YTVGLDQGAAGS-ANRRM 91

Query: 81  LS--GANSLNYQVYTDAARSSIWGDGSSGTSFITDGYLLQVLTPVVKHYTVYGRVPGSQN 138
            S  GA+ ++Y +Y DAAR++ W  GS+  + +  G          +++ VYG VP  Q+
Sbjct: 92  ASADGASWIDYGLYQDAARTTAWNTGSAAVAGVGTGN--------AQNFPVYGYVPAGQS 143

Query: 139 VKAGSYLDTLTILITY 154
            +AG+Y D ++I ++Y
Sbjct: 144 PRAGAYSDVVSITLSY 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.127    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 409,953
Number of extensions: 14084
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 3
Length of query: 154
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 77
Effective length of database: 1,255,275
Effective search space: 96656175
Effective search space used: 96656175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)