BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0004.p
         (166 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311892|ref|YP_003775984.1| signal peptide protein [Herbasp...   318   1e-88
gi|300311888|ref|YP_003775980.1| signal peptide protein [Herbasp...   112   2e-26
gi|300311891|ref|YP_003775983.1| spore coat U domain-containing ...    72   2e-14

>gi|300311892|ref|YP_003775984.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  318 bits (816), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 165/166 (99%), Positives = 165/166 (99%)

Query: 1   MFVTKKNRFIAACVAAATLTCAAPASFAATASASLTISASVVASCTVVGSSIAFGAYNQA 60
           MFVTKKNRFIAACVAAATLTCAAPASFAATASASLTISASVVASCTVVGSSIAFGAY QA
Sbjct: 1   MFVTKKNRFIAACVAAATLTCAAPASFAATASASLTISASVVASCTVVGSSIAFGAYTQA 60

Query: 61  VVNQTGSITVQCTNGTAYNVGLDAGTGTGATVSNRKMSASGGGTLNYALYRDSARSSNWG 120
           VVNQTGSITVQCTNGTAYNVGLDAGTGTGATVSNRKMSASGGGTLNYALYRDSARSSNWG
Sbjct: 61  VVNQTGSITVQCTNGTAYNVGLDAGTGTGATVSNRKMSASGGGTLNYALYRDSARSSNWG 120

Query: 121 STIGTDTLTGTGSGLAQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY 166
           STIGTDTLTGTGSGLAQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY
Sbjct: 121 STIGTDTLTGTGSGLAQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY 166


>gi|300311888|ref|YP_003775980.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score =  112 bits (279), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 90/142 (63%), Gaps = 6/142 (4%)

Query: 26  SFAATASASLTISASVVASCTVVGSSIAFGAYNQAVVNQTGSITVQCTNGTAYNVGLDAG 85
           + AA  + +L ISA V   C+V  +++ FG Y  + + Q   I V C+NGT+Y VGLD G
Sbjct: 23  ALAAAPTGNLEISAIVTQQCSVQSAALPFGVYGSSALQQNAQIGVTCSNGTSYTVGLDQG 82

Query: 86  TGTGATVSNRKM-SASGGGTLNYALYRDSARSSNWGSTIGTDTLTGTGSGLAQTLTVYGQ 144
               A  +NR+M SA G   ++Y LY+D+AR++ W +  G+  + G G+G AQ   VYG 
Sbjct: 83  A---AGSANRRMASADGASWIDYGLYQDAARTTAWNT--GSAAVAGVGTGNAQNFPVYGY 137

Query: 145 IPAAQTPLAGSYSDTVTVTLTY 166
           +PA Q+P AG+YSD V++TL+Y
Sbjct: 138 VPAGQSPRAGAYSDVVSITLSY 159


>gi|300311891|ref|YP_003775983.1| spore coat U domain-containing
           protein [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score = 72.4 bits (176), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 75/135 (55%), Gaps = 16/135 (11%)

Query: 45  CTVVGSSIAFGAYNQ---AVVNQTGSITVQCTNGT----AYNVGLDAGTGTGATVSNRKM 97
           C+   S ++FG Y+    A ++  GSI+V C        AY V L +G  +GA +S RKM
Sbjct: 41  CSASSSPVSFGLYDPQSSATIDNAGSISVTCQATVSLLMAYTVKLSSGN-SGA-LSQRKM 98

Query: 98  SASGGGTLNYALYRDSARSSNWG------STIGTDTLTGTGSGLAQTLTVYGQIPAAQTP 151
             SG  +LNY +Y D+ARSS WG      S I    L    + + +  TVYG++P +Q  
Sbjct: 99  -LSGANSLNYQVYTDAARSSIWGDGSSGTSFITDGYLLQVLTPVVKHYTVYGRVPGSQNV 157

Query: 152 LAGSYSDTVTVTLTY 166
            AGSY DT+T+ +TY
Sbjct: 158 KAGSYLDTLTILITY 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.122    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 337,410
Number of extensions: 11707
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 88
Effective length of database: 1,250,540
Effective search space: 110047520
Effective search space used: 110047520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)