BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0001.p (255 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 329 1e-91 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 326 1e-90 gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra... 325 2e-90 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 325 2e-90 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 325 3e-90 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 329 bits (843), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 182/255 (71%), Positives = 218/255 (85%) Query: 1 LASIVTRVRSGTHNIETAATEIAAGNLDLSSRTEEQAGALEETASAMEELTSTVKHNAEN 60 L SIV +VR GT IE A++EIA+GNLDLSSRTE+QA +LEETASAMEEL +TVK NA+N Sbjct: 258 LVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNADN 317 Query: 61 ARQASEMAVSASTVAGEGGTVVKQVIDTMEQINDSSKKIVDIISVIDGIAFQTNILALNA 120 A+QAS++AVSAS VA +GG VV QV+ TM+ IN SS+KIVDIISVIDGIAFQTNILALNA Sbjct: 318 AKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALNA 377 Query: 121 AVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKILISDSVEKVETGSQLVAQAGQTI 180 AVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEI LI+DSV ++E GS LV QAGQT+ Sbjct: 378 AVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQTM 437 Query: 181 GNVVESVRRVSAIVSEISTASREQSDGISQVNLAITQMDNVTQQNAALVEEAAAAAKSLQ 240 NVV SV+RV+ +V+EIS AS+EQS GI+QVN AIT MD TQQN+ALVEEAAAAA S++ Sbjct: 438 ENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAANSMK 497 Query: 241 GESVELTTIVSTFKI 255 ++ L+ +V+TF++ Sbjct: 498 EQAGALSGLVATFRL 512 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 326 bits (835), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 189/255 (74%), Positives = 217/255 (85%) Query: 1 LASIVTRVRSGTHNIETAATEIAAGNLDLSSRTEEQAGALEETASAMEELTSTVKHNAEN 60 L IV+ VR G+ I TA+ EIA GNLDLSSRTEEQAGALEETASAMEELTSTVK NA+N Sbjct: 259 LHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEETASAMEELTSTVKQNADN 318 Query: 61 ARQASEMAVSASTVAGEGGTVVKQVIDTMEQINDSSKKIVDIISVIDGIAFQTNILALNA 120 ARQA+ +A +AS VA +GG+VV QV+ TM +IND+S+KIVDIISVIDGIAFQTNILALNA Sbjct: 319 ARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDIISVIDGIAFQTNILALNA 378 Query: 121 AVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKILISDSVEKVETGSQLVAQAGQTI 180 AVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI DSV +V+ GS+LV QAG T+ Sbjct: 379 AVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVSRVDNGSRLVEQAGTTM 438 Query: 181 GNVVESVRRVSAIVSEISTASREQSDGISQVNLAITQMDNVTQQNAALVEEAAAAAKSLQ 240 VV SVRRV+ +V+EIS AS EQSDGI Q+N AITQMD VTQQNAALVEEAAAAA+SLQ Sbjct: 439 TEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQQNAALVEEAAAAAQSLQ 498 Query: 241 GESVELTTIVSTFKI 255 +S L+ VS FK+ Sbjct: 499 EQSTRLSATVSVFKL 513 >gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 325 bits (833), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 189/255 (74%), Positives = 219/255 (85%) Query: 1 LASIVTRVRSGTHNIETAATEIAAGNLDLSSRTEEQAGALEETASAMEELTSTVKHNAEN 60 LA+IV +VR GTH IE A+ EIA GN+DLSSRTE+QAGALEETASAMEEL STVK NA+N Sbjct: 268 LAAIVGKVREGTHAIEQASAEIATGNMDLSSRTEQQAGALEETASAMEELMSTVKQNADN 327 Query: 61 ARQASEMAVSASTVAGEGGTVVKQVIDTMEQINDSSKKIVDIISVIDGIAFQTNILALNA 120 ARQAS++AVSAS VA +GG VV QV+ TME IN SS+KIVDIISVIDGIAFQTNILALNA Sbjct: 328 ARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIVDIISVIDGIAFQTNILALNA 387 Query: 121 AVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKILISDSVEKVETGSQLVAQAGQTI 180 AVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEI LI+DSV ++E GS LV QAG T+ Sbjct: 388 AVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLINDSVGQIEQGSSLVGQAGATM 447 Query: 181 GNVVESVRRVSAIVSEISTASREQSDGISQVNLAITQMDNVTQQNAALVEEAAAAAKSLQ 240 NVV SV+RV+ +V+EIS AS+EQS GI+QVNLAIT MD TQQN+ALVEEAAAAA S++ Sbjct: 448 ENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEATQQNSALVEEAAAAANSMK 507 Query: 241 GESVELTTIVSTFKI 255 ++ +L +VSTFK+ Sbjct: 508 TQAEQLAGLVSTFKL 522 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 325 bits (833), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 187/255 (73%), Positives = 216/255 (84%) Query: 1 LASIVTRVRSGTHNIETAATEIAAGNLDLSSRTEEQAGALEETASAMEELTSTVKHNAEN 60 L IV+ VRSGT I TA++EIAAGNLDLSSRTE+QA +L ETASAMEEL STV+ NA+N Sbjct: 260 LRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLAETASAMEELISTVRQNADN 319 Query: 61 ARQASEMAVSASTVAGEGGTVVKQVIDTMEQINDSSKKIVDIISVIDGIAFQTNILALNA 120 ARQAS++A SAS VA +GG VV QV+DTM IN SS+KIVDIISVIDGIAFQTNILALNA Sbjct: 320 ARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVDIISVIDGIAFQTNILALNA 379 Query: 121 AVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKILISDSVEKVETGSQLVAQAGQTI 180 AVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI+DSV KV+ GS+LV QAG T+ Sbjct: 380 AVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELINDSVGKVDDGSRLVEQAGNTM 439 Query: 181 GNVVESVRRVSAIVSEISTASREQSDGISQVNLAITQMDNVTQQNAALVEEAAAAAKSLQ 240 VV SVRRV+ IV+EIS AS EQ+ GI Q+NLAITQMD VTQQNAALVEEAAAAA S+Q Sbjct: 440 QEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVTQQNAALVEEAAAAAASMQ 499 Query: 241 GESVELTTIVSTFKI 255 ++ L +VS F++ Sbjct: 500 TQAGRLMQMVSVFRL 514 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 325 bits (832), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 185/255 (72%), Positives = 218/255 (85%) Query: 1 LASIVTRVRSGTHNIETAATEIAAGNLDLSSRTEEQAGALEETASAMEELTSTVKHNAEN 60 L IV+ VR GT +I TA+ EIA+GNLDLS+RTE+QAG+LEETASAMEE+TSTV+ NA+N Sbjct: 262 LIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQNADN 321 Query: 61 ARQASEMAVSASTVAGEGGTVVKQVIDTMEQINDSSKKIVDIISVIDGIAFQTNILALNA 120 ARQA++MAVSAS +A +GG +V +V+ TM++IN SS+KIVDII VIDGIAFQTNILALNA Sbjct: 322 ARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNILALNA 381 Query: 121 AVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKILISDSVEKVETGSQLVAQAGQTI 180 AVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIK LI+DSV KVE GS LVAQAG T+ Sbjct: 382 AVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQAGATM 441 Query: 181 GNVVESVRRVSAIVSEISTASREQSDGISQVNLAITQMDNVTQQNAALVEEAAAAAKSLQ 240 VV SVR V+ IV+EIS AS EQS GI ++N A+TQMD TQQNAALVE+AAAAAKS+Q Sbjct: 442 EQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAAAKSMQ 501 Query: 241 GESVELTTIVSTFKI 255 ++V LT +S FK+ Sbjct: 502 EQAVRLTQSISIFKL 516 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.306 0.119 0.287 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 426,054 Number of extensions: 11501 Number of successful extensions: 350 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 71 Length of query: 255 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 172 Effective length of database: 1,226,865 Effective search space: 211020780 Effective search space used: 211020780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 129 (54.3 bits)