BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0364.p (567 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibioti... 1131 0.0 gi|300312350|ref|YP_003776442.1| bacteriocin/lantibiotic exporte... 221 2e-58 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 175 8e-45 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 152 6e-38 gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 119 9e-28 >gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibiotic ATPase/permease fusion exporter protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 1131 bits (2925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 567/567 (100%), Positives = 567/567 (100%) Query: 1 MNASEQVHIDQPQVLQDLRADPSYLSLLRAYGSRFVEIIVAGIVVNVLGLLMPLYSRLIY 60 MNASEQVHIDQPQVLQDLRADPSYLSLLRAYGSRFVEIIVAGIVVNVLGLLMPLYSRLIY Sbjct: 1 MNASEQVHIDQPQVLQDLRADPSYLSLLRAYGSRFVEIIVAGIVVNVLGLLMPLYSRLIY 60 Query: 61 DKVIGNHIPETLWALTLGMLLFVALELVLRIIRVYYTEQLAGRLDSEFDEVSARRMLTAR 120 DKVIGNHIPETLWALTLGMLLFVALELVLRIIRVYYTEQLAGRLDSEFDEVSARRMLTAR Sbjct: 61 DKVIGNHIPETLWALTLGMLLFVALELVLRIIRVYYTEQLAGRLDSEFDEVSARRMLTAR 120 Query: 121 VQAPVGVVLARYRDLSAARDLMSSNYMLLLVDLPFLLLYLVVLGLIGGHMVWVLLVGGGL 180 VQAPVGVVLARYRDLSAARDLMSSNYMLLLVDLPFLLLYLVVLGLIGGHMVWVLLVGGGL Sbjct: 121 VQAPVGVVLARYRDLSAARDLMSSNYMLLLVDLPFLLLYLVVLGLIGGHMVWVLLVGGGL 180 Query: 181 LVGLQLLLKVPGNDYANSAMKAGTGKVDKLASIVYGMETLKTSPLQHRLLRAFLADASAN 240 LVGLQLLLKVPGNDYANSAMKAGTGKVDKLASIVYGMETLKTSPLQHRLLRAFLADASAN Sbjct: 181 LVGLQLLLKVPGNDYANSAMKAGTGKVDKLASIVYGMETLKTSPLQHRLLRAFLADASAN 240 Query: 241 AVAQAKSRFWMNTSYAISSVGYTLISVATLVVGVYLVEDNLLTVGALIACSLLISRAATV 300 AVAQAKSRFWMNTSYAISSVGYTLISVATLVVGVYLVEDNLLTVGALIACSLLISRAATV Sbjct: 241 AVAQAKSRFWMNTSYAISSVGYTLISVATLVVGVYLVEDNLLTVGALIACSLLISRAATV 300 Query: 301 LSSLAAFLGRIEMFRRARAEFDQLFEEPEQGPTADVLRQDMRGLIQVGNLLLHLDKKETP 360 LSSLAAFLGRIEMFRRARAEFDQLFEEPEQGPTADVLRQDMRGLIQVGNLLLHLDKKETP Sbjct: 301 LSSLAAFLGRIEMFRRARAEFDQLFEEPEQGPTADVLRQDMRGLIQVGNLLLHLDKKETP 360 Query: 361 TLRNISLTIQPGEKVGIVGRSGSGKSTLLRTLAGLHQAEEGHVLIDGVAVTAYAEEVRMR 420 TLRNISLTIQPGEKVGIVGRSGSGKSTLLRTLAGLHQAEEGHVLIDGVAVTAYAEEVRMR Sbjct: 361 TLRNISLTIQPGEKVGIVGRSGSGKSTLLRTLAGLHQAEEGHVLIDGVAVTAYAEEVRMR 420 Query: 421 CIGFKPQEPFLFDGTVAANIFVGDRVPGQVYEAALAVSSLDDLIARGELRLDQLIKAPGN 480 CIGFKPQEPFLFDGTVAANIFVGDRVPGQVYEAALAVSSLDDLIARGELRLDQLIKAPGN Sbjct: 421 CIGFKPQEPFLFDGTVAANIFVGDRVPGQVYEAALAVSSLDDLIARGELRLDQLIKAPGN 480 Query: 481 LSGGQRQMVALARVIACTPRILLLDEPTTGIDQQTEARIIERLVGYAGGRTLVVATHSPA 540 LSGGQRQMVALARVIACTPRILLLDEPTTGIDQQTEARIIERLVGYAGGRTLVVATHSPA Sbjct: 481 LSGGQRQMVALARVIACTPRILLLDEPTTGIDQQTEARIIERLVGYAGGRTLVVATHSPA 540 Query: 541 LLRHMDRIVVIDGGRIVADGPRAQILQ 567 LLRHMDRIVVIDGGRIVADGPRAQILQ Sbjct: 541 LLRHMDRIVVIDGGRIVADGPRAQILQ 567 >gi|300312350|ref|YP_003776442.1| bacteriocin/lantibiotic exporter/double-glycine peptidase domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 730 Score = 221 bits (562), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 169/556 (30%), Positives = 287/556 (51%), Gaps = 18/556 (3%) Query: 24 YLSLLRAYGSRFVEIIVAGIVVNVLGLLMPLYSRLIYDKVIGNHIPETLWALTLGMLLFV 83 +L + + +EI+VA +V++++ L ++S +YD+VI H TL L +G+ L + Sbjct: 163 FLDAIGEFRPVLIEIVVASVVMSIIALGASIFSMQVYDRVIPTHGVATLIVLAIGVGLAI 222 Query: 84 ALELVLRIIRVYYTEQLAGRLDSEFDEVSARRMLTARV-QAP--VGVVLARYRDLSAARD 140 EL ++ R + +++ LD++ + R+L RV Q P VG + + R R Sbjct: 223 LFELGMKFARSHIMDKVVSGLDAKLSQALYERLLAVRVDQLPGSVGSLAGQLRGYEQIRS 282 Query: 141 LMSSNYMLLLVDLPFLLLYLVVLGLIGGHMVWVLLVGG-----GLLVGLQLLLKVPGNDY 195 +S + LVDLP LL+++V+ LI W+ LV +L+G KV Sbjct: 283 FYTSQTLFTLVDLPLGLLFVLVIALIASP--WMALVPTVFGVVAILIGYLSNRKV--ARL 338 Query: 196 ANSAMKAGTGKVDKLASIVYGMETLKTSPLQHRLLRAFLADASANAV-AQAKSRFWMNTS 254 A+ + A K L V G+ET+K+ + L ++ D SA ++ + R + + Sbjct: 339 ADKSAAASNLKTGLLVETVEGVETIKSGSGGWKFLSRWI-DVSAESIRSDMAMRAIGDHA 397 Query: 255 YAISSVGYTLISVATLVVGVYLVEDNLLTVGALIACSLLISRAATVLSSLAAFLGRIEMF 314 I++ L T+++G +LV + +T+GALIACS+L R ++ + + + Sbjct: 398 GYIAATLQQLSYSTTVIIGAFLVINGQITMGALIACSILGGRILAPVAMIPGLMVQRAHT 457 Query: 315 RRARAEFDQLFE-EPEQGPTADVLRQDMRGLIQVGNLLLHLDKKETPTLRNISLTIQPGE 373 + A ++++ + +QG + ++RG ++ + LTI GE Sbjct: 458 KATLAGLEKIYALQTDQGSERQLTPDNLRGEFRIEEAKFTYAGSMLNAMTIDQLTINAGE 517 Query: 374 KVGIVGRSGSGKSTLLRTLAGLHQAEEGHVLIDGVAVTAYAEEVRMRCIGFKPQEPFLFD 433 +V ++G G+GKST+LR L+GL++ ++G +L+DG+ + + IG+ Q+ LF Sbjct: 518 RVAVLGPIGAGKSTILRLLSGLYRPQQGRILLDGLDMANINRLTLNQHIGYLQQDHRLFV 577 Query: 434 GTVAANIFVGDRVPG-QVYEAALAVSSLDDLIARGELRLDQLIKAPG-NLSGGQRQMVAL 491 G++ N+ +G PG V + + L L++ LD I+ G LSGGQ+Q+VA Sbjct: 578 GSLRENLLIGLPDPGDDVLRQVMERTGLLRLVSSHPKGLDLPIQEGGRGLSGGQKQLVAF 637 Query: 492 ARVIACTPRILLLDEPTTGIDQQTEARIIERL-VGYAGGRTLVVATHSPALLRHMDRIVV 550 R++ C P + LLDEPT +D+ E + L +GGRTLVV TH PA L +DR++V Sbjct: 638 TRLLLCQPNVFLLDEPTASMDEDLERHCLNVLNQEISGGRTLVVVTHKPAFLPMVDRVIV 697 Query: 551 IDGGRIVADGPRAQIL 566 + G RIV DGPR IL Sbjct: 698 VVGNRIVLDGPRDVIL 713 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 175 bits (444), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 153/555 (27%), Positives = 270/555 (48%), Gaps = 32/555 (5%) Query: 31 YGSRFVEIIVAGIVVNVLGLLMPLYSRLIYDKVIGNHIPETLWALTLGMLLFVALELVLR 90 Y E+++ +V+ ++GL+ P++ +++ DKV+ NH TL + +G++ E VL Sbjct: 159 YRKTLAEVLLISLVLQLIGLITPMFFQVVMDKVLVNHAMMTLNVIAVGLIAATVFEAVLT 218 Query: 91 IIRVYYTEQLAGRLDSEFDEVSARRMLTARVQAPV--------GVVLARYRDLSAARDLM 142 IR + ++D E R+ + + P+ G +AR R+L R + Sbjct: 219 GIRTAIFANASSKIDVEL----GSRLFSHLLSLPLSYFQVRRAGDSIARVRELENIRSFL 274 Query: 143 SSNYMLLLVDLPFLLLYLVVLGLIGGHMVWVLLVGGGLLVGLQL----LLKVPGNDYANS 198 + N M L++D+ F ++L V+ + ++L + V L L LL+ ND N Sbjct: 275 TGNAMTLVLDIMFSFVFLGVMLWYSVSLSLIVLASIPVYVLLSLVFTPLLRERLNDKFNK 334 Query: 199 AMKAGTGKVDKLASIVYGMETLKTSPLQHRLLRAFLADASANAVAQAKSRFWMNTSY-AI 257 + + + V+ L GM+T+K ++ R + + +A A + N S A Sbjct: 335 SAENQSFLVETLT----GMDTVKAMAVEPRWQQKWDKQLAAYVAAGLTT---TNISLLAS 387 Query: 258 SSVGY--TLISVATLVVGVYLVEDNLLTVGALIACSLLISRAATVLSSLAAFLGRIEMFR 315 +VG L++V + +G LV N ++VG L+A ++L + A+ + LA + Sbjct: 388 GAVGLVSKLVTVGIMWLGALLVVKNEMSVGELVAFNMLAGQVASPILRLAQLWNDFQQIG 447 Query: 316 RARAEFDQLFEEPEQGPTADVLRQDMRGLIQVGNLLLHLDKKETP-TLRNISLTIQPGEK 374 + + + + + + G I +L+ + ETP +R +SL I+PGE Sbjct: 448 ISMSRLADVLDARTEVAGNRTRLPRVNGAISF-DLVSFRYRPETPEVIRGLSLQIRPGEV 506 Query: 375 VGIVGRSGSGKSTLLRTLAGLHQAEEGHVLIDGVAVTAYAEEVRMRCIGFKPQEPFLFDG 434 +GIVGRSGSGKSTL + + L+ E G + +DG + + IG QE LF Sbjct: 507 IGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSR 566 Query: 435 TVAANIFVGD-RVP-GQVYEAALAVSSLDDLIARGELRLDQLIKAPGN-LSGGQRQMVAL 491 ++ NI + D P Q+ EAA ++ D I D ++ G+ LSGGQRQ +A+ Sbjct: 567 SIRDNIALADPSTPIEQIIEAA-KLAGAHDFICELPEGYDTMVGEQGSGLSGGQRQRIAI 625 Query: 492 ARVIACTPRILLLDEPTTGIDQQTEARIIERLVGYAGGRTLVVATHSPALLRHMDRIVVI 551 AR + P IL+ DE T+ +D ++E I + + GRT+++ H + +R DRI+V+ Sbjct: 626 ARALITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRIIVM 685 Query: 552 DGGRIVADGPRAQIL 566 + GR+ G +++ Sbjct: 686 ERGRVAESGSHDELI 700 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 152 bits (385), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 120/388 (30%), Positives = 192/388 (49%), Gaps = 32/388 (8%) Query: 200 MKAGTGKVDK--------LASIVYGMETLKTSPLQHRLLRAFLADASANAVAQAKSRFWM 251 ++ G K+D+ LA + G+ +K + R + F N + + + Sbjct: 350 LRHGFEKIDRIWSEVTNVLADTIPGIRVVKAFAQEKREVARFREANRHNLMVNDR----V 405 Query: 252 NTSYAISSVGYTLISVATLVV----GVYLVEDNLLTVGALIACSLLISRAATVLSSLAAF 307 N +++ + T ++ L+V G++ V N +TVG L A ISR T L S++ Sbjct: 406 NKIWSLFTPTVTFLTEVGLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYTRLDSMSRI 465 Query: 308 LGRIEMFRRARAEFDQLFE-------EPEQGPTADVLRQDMRGLIQVGNLLLHLDKKETP 360 + + ++A A ++F+ PE P V + ++G I+V N+ + Sbjct: 466 ---VSVTQKAAAGAKRIFDILDHVSSVPE--PANPVHLEKVQGAIEVRNIGFRYGNRAV- 519 Query: 361 TLRNISLTIQPGEKVGIVGRSGSGKSTLLRTLAGLHQAEEGHVLIDGVAVTAYAEEVRMR 420 +RN+SL+I PGE +G+VG SGSGKST++ + + EG + IDGV + + R Sbjct: 520 -IRNMSLSIAPGEMIGLVGHSGSGKSTMVNLICRFYDVSEGAIRIDGVDIRSLPISEYRR 578 Query: 421 CIGFKPQEPFLFDGTVAANIFVGD-RVPGQVYEAALAVSSLDDLIARGELRLDQLIKAPG 479 IG QEPFLF GT+A NI G + AA + + I R D L+ G Sbjct: 579 NIGLVLQEPFLFFGTIAENIAYGKPEATREEIIAAARAAHAHEFILRLPQGYDSLVGERG 638 Query: 480 N-LSGGQRQMVALARVIACTPRILLLDEPTTGIDQQTEARIIERLVGYAGGRTLVVATHS 538 LSGG+RQ +++AR + PRIL+LDE T+ +D TE I + L GRT + H Sbjct: 639 QALSGGERQRISIARALLIDPRILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHR 698 Query: 539 PALLRHMDRIVVIDGGRIVADGPRAQIL 566 + LR DR+VV+D G++V G +++ Sbjct: 699 LSTLRKADRLVVLDRGQVVEVGNHEELM 726 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 119 bits (297), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 114/214 (53%), Gaps = 7/214 (3%) Query: 360 PTLRNISLTIQPGEKVGIVGRSGSGKSTLLRTLAGLHQAEEGHVLIDGVAVTAYAEEVRM 419 P + + L I+PGEK+G+VGRSG+GKST++ L + E G + IDG + ++ Sbjct: 376 PVVDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLR 435 Query: 420 RCIGFKPQEPFLFDGTVAANIFVG--DRVPGQVYEAALAVSSLDDL----IARGELRLDQ 473 IG Q+ L +V NI G D ++ AA + D + A+G D Sbjct: 436 AQIGMVTQDTSLLHRSVRENITYGRPDASDAEMTHAAERAEAHDFIGTLADAKGRTGYDA 495 Query: 474 LIKAPG-NLSGGQRQMVALARVIACTPRILLLDEPTTGIDQQTEARIIERLVGYAGGRTL 532 + G LSGGQRQ +A+ARV+ ILLLDE T+ +D + EA I L G+T+ Sbjct: 496 HVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTV 555 Query: 533 VVATHSPALLRHMDRIVVIDGGRIVADGPRAQIL 566 V H + + MDR++V+D GRIV G A++L Sbjct: 556 VAIAHRLSTIAAMDRLIVLDQGRIVEQGSHAELL 589 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.140 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,607,566 Number of extensions: 67145 Number of successful extensions: 674 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 482 Number of HSP's successfully gapped: 146 Length of query: 567 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 477 Effective length of database: 1,193,720 Effective search space: 569404440 Effective search space used: 569404440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)