BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0360.p
         (257 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311129|ref|YP_003775221.1| hypothetical protein Hsero_1803...   516   e-148
gi|300312344|ref|YP_003776436.1| hypothetical protein Hsero_3040...    58   6e-10

>gi|300311129|ref|YP_003775221.1| hypothetical protein Hsero_1803
           [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score =  516 bits (1328), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MESGKEQNFWPGFVDALSNVVLVMIFVVVVFVVTLFYYSQKLAQMKVSKLISQGHVQVVG 60
           MESGKEQNFWPGFVDALSNVVLVMIFVVVVFVVTLFYYSQKLAQMKVSKLISQGHVQVVG
Sbjct: 1   MESGKEQNFWPGFVDALSNVVLVMIFVVVVFVVTLFYYSQKLAQMKVSKLISQGHVQVVG 60

Query: 61  AQKASQTDAQATPESSSTQAAETPGEREKAQEIEQLKREVATLKAKLAAPPLQSDAGSLR 120
           AQKASQTDAQATPESSSTQAAETPGEREKAQEIEQLKREVATLKAKLAAPPLQSDAGSLR
Sbjct: 61  AQKASQTDAQATPESSSTQAAETPGEREKAQEIEQLKREVATLKAKLAAPPLQSDAGSLR 120

Query: 121 SAAAPSSPNAIQVKAEPSDKEVAPGLRIDANEKAVTLNFDVDSTQLSEEGGKALDKSIGD 180
           SAAAPSSPNAIQVKAEPSDKEVAPGLRIDANEKAVTLNFDVDSTQLSEEGGKALDKSIGD
Sbjct: 121 SAAAPSSPNAIQVKAEPSDKEVAPGLRIDANEKAVTLNFDVDSTQLSEEGGKALDKSIGD 180

Query: 181 WVRRAKSSQGKIVITGVIGSGAYSESRRRAYYRTVAVRNYLIDAGVDKERVVSRVATSEN 240
           WVRRAKSSQGKIVITGVIGSGAYSESRRRAYYRTVAVRNYLIDAGVDKERVVSRVATSEN
Sbjct: 181 WVRRAKSSQGKIVITGVIGSGAYSESRRRAYYRTVAVRNYLIDAGVDKERVVSRVATSEN 240

Query: 241 GAADDSRVVVQYQASAK 257
           GAADDSRVVVQYQASAK
Sbjct: 241 GAADDSRVVVQYQASAK 257


>gi|300312344|ref|YP_003776436.1| hypothetical protein Hsero_3040
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score = 58.2 bits (139), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 108/253 (42%), Gaps = 24/253 (9%)

Query: 6   EQNFWPGFVDALSNVVLVMIFVVVVFVVTLFYYSQKLAQMKVSKLISQGHVQVVGAQKAS 65
           EQNFWPG+VD++ N+V+ ++ ++ +  + + Y+S +     V    ++         KA 
Sbjct: 8   EQNFWPGYVDSMVNMVMYLLLLIAILAMAVMYFSMRARDEAVDAKATEKLALGKPHPKAY 67

Query: 66  QTDAQATPESSSTQAAETPGE--REKAQEIE-QLKREVATLKAKLAAPPLQSDAGSLRSA 122
               +A PE ++        E  R+   E E + K +VA LK KL    L+  A  L   
Sbjct: 68  PGPNEAKPEIAAEDELHAQLERLRQSMHESEIRYKADVAELKEKLRESELRFKASGLSKT 127

Query: 123 AAP----------SSPNAIQVKAEPSDKEV---------APGLRIDANEKAVTL-NFDVD 162
             P          S+P+A   K   +++ V           GL   A   +V +  F   
Sbjct: 128 EKPNQKERGNNLKSTPDADLAKEGAAERVVDASGTAGSLPQGLEALALRPSVLIVRFRPG 187

Query: 163 STQLSEEGGKALDKSIGDWVRRAKSSQGKIVITGVIGSGAYSESRRRAYYRTVAVRNYLI 222
           +  LS    K + ++         + +    I+     G  SES R A+YR VAVRN+L+
Sbjct: 188 TVDLSGIEAKRMTETFVSHFNWNANREQTFTISSTAVEG-LSESNRMAFYRVVAVRNHLL 246

Query: 223 DAGVDKERVVSRV 235
             GV   R+  R+
Sbjct: 247 SLGVPASRIRQRI 259


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.125    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 566,064
Number of extensions: 16558
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 257
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,226,865
Effective search space: 213474510
Effective search space used: 213474510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)