BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0359.p
         (547 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311128|ref|YP_003775220.1| outer membrane protein [Herbasp...  1100   0.0  

>gi|300311128|ref|YP_003775220.1| outer membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 547

 Score = 1100 bits (2846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/547 (99%), Positives = 545/547 (99%)

Query: 1   MVLMKVKSKRFLIGVSLGLATHQMVSAADTPPAFTEPPAPTQVVSPATAAPLDSPPQIRL 60
           MVLMKVKSKRFLIGVSLGLATHQMVSAADTPPAFTEPPAPTQVVSPA+AAPLDSPPQIRL
Sbjct: 1   MVLMKVKSKRFLIGVSLGLATHQMVSAADTPPAFTEPPAPTQVVSPASAAPLDSPPQIRL 60

Query: 61  GADPGGPPVGDFKLPALPGESAMGSPQDEILQLLRQADPEFSGNAIVLPQISVVPEGAPV 120
           GADPGG  VGDFKLPALPGESAMGSPQDEILQLLRQADPEFSGNAIVLPQISVVPEGAPV
Sbjct: 61  GADPGGAAVGDFKLPALPGESAMGSPQDEILQLLRQADPEFSGNAIVLPQISVVPEGAPV 120

Query: 121 NDLTLSQVLDLAVNNSYSYAATSAQADQARYAARATAGQMGPTLDVRAQKGQEYSSPSSV 180
           NDLTLSQVLDLAVNNSYSYAATSAQADQARYAARATAGQMGPTLDVRAQKGQEYSSPSSV
Sbjct: 121 NDLTLSQVLDLAVNNSYSYAATSAQADQARYAARATAGQMGPTLDVRAQKGQEYSSPSSV 180

Query: 181 IDPNTGLVRRASDHKRWDVTVIGRQPVFAPGSYFDYRKASSLADAADLRREDARETLYYT 240
           IDPNTGLVRRASDHKRWDVTVIGRQPVFAPGSYFDYRKASSLADAADLRREDARETLYYT
Sbjct: 181 IDPNTGLVRRASDHKRWDVTVIGRQPVFAPGSYFDYRKASSLADAADLRREDARETLYYT 240

Query: 241 AIKSYYDVMRAYATLSFSRSYAQRMNALLEYMRKRLEGGGASRIDFERVRGRSLTAQAAV 300
           AIKSYYDVMRAYATLSFSRSYAQRMNALLEYMRKRLEGGGASRIDFERVRGRSLTAQAAV
Sbjct: 241 AIKSYYDVMRAYATLSFSRSYAQRMNALLEYMRKRLEGGGASRIDFERVRGRSLTAQAAV 300

Query: 301 AEAEGALESAMVSLNQITGRKIEQLEVPDHMMPPVPDTSKLALKDIYDTNPGVRAARQDV 360
           AEAEGALESAMVSLNQITGRKIEQLEVPDHMMPPVPDTSKLALKDIYDTNPGVRAARQDV
Sbjct: 301 AEAEGALESAMVSLNQITGRKIEQLEVPDHMMPPVPDTSKLALKDIYDTNPGVRAARQDV 360

Query: 361 EAANQELKSARAKFSPTLAVEFTQTKTRGAGGAIDTTNPTANSLQLSTDRRLMLVMTMNL 420
           EAANQELKSARAKFSPTLAVEFTQTKTRGAGGAIDTTNPTANSLQLSTDRRLMLVMTMNL
Sbjct: 361 EAANQELKSARAKFSPTLAVEFTQTKTRGAGGAIDTTNPTANSLQLSTDRRLMLVMTMNL 420

Query: 421 LNGGSDVYYSKQAGAKYVEKSNTVLDLERKLREQIEINYRTLGAVRKRMDISRQAYLTNA 480
           LNGGSDVYYSKQAGAKYVEKSNTVLDLERKLREQIEINYRTLGAVRKRMDISRQAYLTNA
Sbjct: 421 LNGGSDVYYSKQAGAKYVEKSNTVLDLERKLREQIEINYRTLGAVRKRMDISRQAYLTNA 480

Query: 481 NVADVFLDQLSAGSKQLIDVLDAYQQAYQARVDFSNLLFQQADISYQILRNTGRASAAVL 540
           NVADVFLDQLSAGSKQLIDVLDAYQQAYQARVDFSNLLFQQADISYQILRNTGRASAAVL
Sbjct: 481 NVADVFLDQLSAGSKQLIDVLDAYQQAYQARVDFSNLLFQQADISYQILRNTGRASAAVL 540

Query: 541 TPTQAEK 547
           TPTQAEK
Sbjct: 541 TPTQAEK 547


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,440,081
Number of extensions: 54260
Number of successful extensions: 270
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 3
Length of query: 547
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 457
Effective length of database: 1,193,720
Effective search space: 545530040
Effective search space used: 545530040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)