BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0348.p
         (156 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311118|ref|YP_003775210.1| DNA-binding repressor transcrip...   320   3e-89
gi|300310215|ref|YP_003774307.1| DNA-binding repressor transcrip...    54   5e-09

>gi|300311118|ref|YP_003775210.1| DNA-binding repressor
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 171

 Score =  320 bits (820), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 156/156 (100%), Positives = 156/156 (100%)

Query: 1   LAKERSRCGHTQKSIADNLDITARTQIKYEIGETAPDAYYLHGLDAIGIDVTYVLTGVRG 60
           LAKERSRCGHTQKSIADNLDITARTQIKYEIGETAPDAYYLHGLDAIGIDVTYVLTGVRG
Sbjct: 16  LAKERSRCGHTQKSIADNLDITARTQIKYEIGETAPDAYYLHGLDAIGIDVTYVLTGVRG 75

Query: 61  ATPSPEESQLIACYRSVDKATRSALTQLLAGMADMVRASRKKRDFFAVPEEVRVRPGRQR 120
           ATPSPEESQLIACYRSVDKATRSALTQLLAGMADMVRASRKKRDFFAVPEEVRVRPGRQR
Sbjct: 76  ATPSPEESQLIACYRSVDKATRSALTQLLAGMADMVRASRKKRDFFAVPEEVRVRPGRQR 135

Query: 121 KLPVGRPRKQKDFLNEAPAKEQAPAKEGGEGESEQG 156
           KLPVGRPRKQKDFLNEAPAKEQAPAKEGGEGESEQG
Sbjct: 136 KLPVGRPRKQKDFLNEAPAKEQAPAKEGGEGESEQG 171


>gi|300310215|ref|YP_003774307.1| DNA-binding repressor
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 145

 Score = 53.9 bits (128), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 1   LAKERSRCGHTQKSIADNLDITARTQIKYEIGETAPDAYYLHGLDAIGIDVTYVLTGVRG 60
           L  ER R G +Q++ A    +  + QI YE G+T PD  ++  +  IG+DV+YV+ G+  
Sbjct: 10  LKSERLRLGFSQEAFAAVGGVRKQAQISYEQGKTLPDIGFMAAVSKIGVDVSYVIFGIPT 69

Query: 61  ATP-SPEESQLIACYRSVDKATRSALTQLLAGMA 93
           A   + +E Q++  +R +D   ++ +  ++ G A
Sbjct: 70  ADALTSDEQQVLQGFRRLDIIGKARVLGVIEGAA 103


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 435,846
Number of extensions: 15836
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 2
Length of query: 156
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,250,540
Effective search space: 97542120
Effective search space used: 97542120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)