BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0346.p (215 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 415 e-117 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 199 1e-52 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 199 1e-52 gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 199 2e-52 gi|300313301|ref|YP_003777393.1| branched-chain amino acid ABC t... 187 7e-49 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 415 bits (1066), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/205 (100%), Positives = 205/205 (100%) Query: 11 AGKTTTMRAISGMIKPKGGEVTLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNL 70 AGKTTTMRAISGMIKPKGGEVTLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNL Sbjct: 38 AGKTTTMRAISGMIKPKGGEVTLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNL 97 Query: 71 LLGAFPRFTRARPKGDIAHDLERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNP 130 LLGAFPRFTRARPKGDIAHDLERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNP Sbjct: 98 LLGAFPRFTRARPKGDIAHDLERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNP 157 Query: 131 EVILLDEPSMGLAPILVDEVFRIIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKIS 190 EVILLDEPSMGLAPILVDEVFRIIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKIS Sbjct: 158 EVILLDEPSMGLAPILVDEVFRIIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKIS 217 Query: 191 VHGPADKLQNDPAVKAAYLGGGAHH 215 VHGPADKLQNDPAVKAAYLGGGAHH Sbjct: 218 VHGPADKLQNDPAVKAAYLGGGAHH 242 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 199 bits (506), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 104/204 (50%), Positives = 146/204 (71%), Gaps = 6/204 (2%) Query: 11 AGKTTTMRAISGMIKPK--GGEVTLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTD 68 AGKTTT++AI+G + G + G+ + G S ++ + LA PEGR VF MS+ + Sbjct: 42 AGKTTTLKAITGTLPASRVEGHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQE 101 Query: 69 NLLLGAFPRFTRARPKGDIAHDLERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVML 128 NLL+GA+ + KG IA D+++ +FPRLKER +Q+AGTLSGGEQQMLAMARA+M Sbjct: 102 NLLMGAYT----SDDKGQIAADIDKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMS 157 Query: 129 NPEVILLDEPSMGLAPILVDEVFRIIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGK 188 +P+++LLDEPSMGL+PI+V+++F +I + QG+T+LLVEQ A AL A GYV+E+G Sbjct: 158 HPKLLLLDEPSMGLSPIMVEKIFEVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGL 217 Query: 189 ISVHGPADKLQNDPAVKAAYLGGG 212 I++ G A ++ +DP VKAAYLG G Sbjct: 218 ITMQGQAQQMLDDPRVKAAYLGEG 241 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 199 bits (506), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 104/204 (50%), Positives = 146/204 (71%), Gaps = 6/204 (2%) Query: 11 AGKTTTMRAISGMIKPK--GGEVTLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTD 68 AGKTTT++AI+G + G + G+ + G S ++ + LA PEGR VF MS+ + Sbjct: 42 AGKTTTLKAITGTLPASRVEGHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQE 101 Query: 69 NLLLGAFPRFTRARPKGDIAHDLERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVML 128 NLL+GA+ + KG IA D+++ +FPRLKER +Q+AGTLSGGEQQMLAMARA+M Sbjct: 102 NLLMGAYT----SDDKGQIAADIDKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMS 157 Query: 129 NPEVILLDEPSMGLAPILVDEVFRIIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGK 188 +P+++LLDEPSMGL+PI+V+++F +I + QG+T+LLVEQ A AL A GYV+E+G Sbjct: 158 HPKLLLLDEPSMGLSPIMVEKIFEVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGL 217 Query: 189 ISVHGPADKLQNDPAVKAAYLGGG 212 I++ G A ++ +DP VKAAYLG G Sbjct: 218 ITMQGQAQQMLDDPRVKAAYLGEG 241 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 199 bits (505), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 107/208 (51%), Positives = 140/208 (67%), Gaps = 3/208 (1%) Query: 8 PQSAGKTTTMRAISGMIKPKGGEVTLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVT 67 P AGKTT + AI G++ P G + G + ++ G+ PE R +FA M++ Sbjct: 39 PNGAGKTTLLSAIMGVL-PSRGAMAFDGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIE 97 Query: 68 DNLLLGAFPRFTRARPKGDIAHDLERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVM 127 DNL+LGAF R+ + D A LE LFPRL+ER+SQ AGTLSGGE+QMLA+ RA+M Sbjct: 98 DNLMLGAFQRYRTG--QRDHAATLEEVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALM 155 Query: 128 LNPEVILLDEPSMGLAPILVDEVFRIIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENG 187 P +++LDEPS+GLAP++V E+FRII L+ +GV++LLVEQ A AAL VADYGYVLENG Sbjct: 156 AKPRLLMLDEPSLGLAPLIVREIFRIIAELRRRGVSILLVEQNARAALQVADYGYVLENG 215 Query: 188 KISVHGPADKLQNDPAVKAAYLGGGAHH 215 I +HGPA +L +D V AYLG H Sbjct: 216 AIRMHGPASQLAHDRRVIEAYLGLSGKH 243 >gi|300313301|ref|YP_003777393.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 187 bits (474), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 102/207 (49%), Positives = 138/207 (66%), Gaps = 7/207 (3%) Query: 8 PQSAGKTTTMRAISGMIKPKGGEVTLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVT 67 P AGK+T + AI G++ P G V G+++ + G+A PE R +F+TMSV Sbjct: 39 PNGAGKSTLLNAIMGVL-PAQGTVRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVE 97 Query: 68 DNLLLGAFPRFT--RARPKGDIAHDLERALELFPRLKERQSQLAGTLSGGEQQMLAMARA 125 DNLLLG F R +A+P +A +LFPRLKER+SQ AGTLSGGE+QMLA+ RA Sbjct: 98 DNLLLGGFRRLRLRQAQPLDQLAT----VFDLFPRLKERRSQQAGTLSGGERQMLAIGRA 153 Query: 126 VMLNPEVILLDEPSMGLAPILVDEVFRIIVRLKEQGVTMLLVEQFAAAALNVADYGYVLE 185 +M P++++LDEPS+GLAP +V E+ I+ L+ G+++LLVEQ A AAL ADYGYVLE Sbjct: 154 MMAKPQLLMLDEPSLGLAPRIVKEILHIVSELRTAGISVLLVEQNARAALQTADYGYVLE 213 Query: 186 NGKISVHGPADKLQNDPAVKAAYLGGG 212 GK+++ G + +L DP V AYLG G Sbjct: 214 LGKVTLQGESAQLAGDPQVIQAYLGFG 240 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 706,876 Number of extensions: 29491 Number of successful extensions: 400 Number of sequences better than 1.0e-08: 105 Number of HSP's gapped: 304 Number of HSP's successfully gapped: 115 Length of query: 215 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 134 Effective length of database: 1,236,335 Effective search space: 165668890 Effective search space used: 165668890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)