BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0345.p (243 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 483 e-138 gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 236 1e-63 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 232 3e-62 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 232 3e-62 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 228 4e-61 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 483 bits (1243), Expect = e-138, Method: Compositional matrix adjust. Identities = 242/243 (99%), Positives = 242/243 (99%), Gaps = 1/243 (0%) Query: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTTMRAISGMIKPKGGEVT 60 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTT MRAISGMIKPKGGEVT Sbjct: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTT-MRAISGMIKPKGGEVT 59 Query: 61 LGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLE 120 LGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLE Sbjct: 60 LGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLE 119 Query: 121 RALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFR 180 RALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFR Sbjct: 120 RALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFR 179 Query: 181 IIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGGG 240 IIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGGG Sbjct: 180 IIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGGG 239 Query: 241 AHH 243 AHH Sbjct: 240 AHH 242 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 236 bits (602), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 128/243 (52%), Positives = 168/243 (69%), Gaps = 4/243 (1%) Query: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTTMRAISGMIKPKGGEVT 60 +L + +L AAYGKVEVL GI + V +GK+VT+IG NGAGKTT + AI G++ P G + Sbjct: 5 VLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTL-LSAIMGVL-PSRGAMA 62 Query: 61 LGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLE 120 G + ++ G+ PE R +FA M++ DNL+LGAF R+ + D A LE Sbjct: 63 FDGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTG--QRDHAATLE 120 Query: 121 RALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFR 180 LFPRL+ER+SQ AGTLSGGE+QMLA+ RA+M P +++LDEPS+GLAP++V E+FR Sbjct: 121 EVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFR 180 Query: 181 IIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGGG 240 II L+ +GV++LLVEQ A AAL VADYGYVLENG I +HGPA +L +D V AYLG Sbjct: 181 IIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLGLS 240 Query: 241 AHH 243 H Sbjct: 241 GKH 243 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 232 bits (591), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 121/242 (50%), Positives = 173/242 (71%), Gaps = 7/242 (2%) Query: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTTMRAISGMIKPK--GGE 58 +L + L AYG ++ + GI +EV +G++VTLIG+NGAGKTTT ++AI+G + G Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTT-LKAITGTLPASRVEGH 63 Query: 59 VTLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHD 118 + G+ + G S ++ + LA PEGR VF MS+ +NLL+GA+ + KG IA D Sbjct: 64 IEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYT----SDDKGQIAAD 119 Query: 119 LERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEV 178 +++ +FPRLKER +Q+AGTLSGGEQQMLAMARA+M +P+++LLDEPSMGL+PI+V+++ Sbjct: 120 IDKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKI 179 Query: 179 FRIIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLG 238 F +I + QG+T+LLVEQ A AL A GYV+E+G I++ G A ++ +DP VKAAYLG Sbjct: 180 FEVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 Query: 239 GG 240 G Sbjct: 240 EG 241 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 232 bits (591), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 121/242 (50%), Positives = 173/242 (71%), Gaps = 7/242 (2%) Query: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTTMRAISGMIKPK--GGE 58 +L + L AYG ++ + GI +EV +G++VTLIG+NGAGKTTT ++AI+G + G Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTT-LKAITGTLPASRVEGH 63 Query: 59 VTLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHD 118 + G+ + G S ++ + LA PEGR VF MS+ +NLL+GA+ + KG IA D Sbjct: 64 IEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYT----SDDKGQIAAD 119 Query: 119 LERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEV 178 +++ +FPRLKER +Q+AGTLSGGEQQMLAMARA+M +P+++LLDEPSMGL+PI+V+++ Sbjct: 120 IDKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKI 179 Query: 179 FRIIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLG 238 F +I + QG+T+LLVEQ A AL A GYV+E+G I++ G A ++ +DP VKAAYLG Sbjct: 180 FEVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 Query: 239 GG 240 G Sbjct: 240 EG 241 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 228 bits (581), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 121/240 (50%), Positives = 161/240 (67%), Gaps = 6/240 (2%) Query: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTTMRAISGMIKPKGGEVT 60 ML +H YG +E LHG+S+ V KG++VTLIG+NGAGKTT M + G + G V Sbjct: 2 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLM-TLCGRPRASSGRVI 60 Query: 61 LGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLE 120 G++IT L +H+I R GLA SPEGRRVF +++V +NL +GAF A +G +E Sbjct: 61 FEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQG-----IE 115 Query: 121 RALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFR 180 LFPRLKER +Q AGT+SGGEQQMLA+ RA+M P ++LLDEP++GLAP+++ ++F Sbjct: 116 YVFGLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFD 175 Query: 181 IIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGGG 240 II ++E GVT+ LVEQ A AL VAD GYVLENG + + L + V+ AYLG G Sbjct: 176 IIRTIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLGHG 235 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 792,472 Number of extensions: 34236 Number of successful extensions: 536 Number of sequences better than 1.0e-08: 118 Number of HSP's gapped: 337 Number of HSP's successfully gapped: 131 Length of query: 243 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 160 Effective length of database: 1,226,865 Effective search space: 196298400 Effective search space used: 196298400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)