BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0340.p (542 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311111|ref|YP_003775203.1| electron transfer flavoprotein-... 1119 0.0 gi|300312147|ref|YP_003776239.1| electron transfer flavoprotein ... 103 3e-23 >gi|300311111|ref|YP_003775203.1| electron transfer flavoprotein-ubiquinone oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 558 Score = 1119 bits (2894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 540/542 (99%), Positives = 541/542 (99%) Query: 1 MEYDVVVVGGGPAGLSAAIRLKQLAAQQNREVSVCVLEKGSEVGAHILSGAVMDPRALSE 60 MEYDVVVVGGGPAGLSAAIRLKQLAAQQNREVSVCVLEKGSEVGAHILSGAVMDPRALSE Sbjct: 17 MEYDVVVVGGGPAGLSAAIRLKQLAAQQNREVSVCVLEKGSEVGAHILSGAVMDPRALSE 76 Query: 61 LIPDWKEQGAPLNTPVTEDRFLFLSASKAYKTPNWLLPTCFQNHGNYVISLSNVTRWLGQ 120 LIPDWKEQGAPLNTPVTEDRFLFLSASKAYKTPNWLLPTCFQNHGNYVISLSNVTRWLGQ Sbjct: 77 LIPDWKEQGAPLNTPVTEDRFLFLSASKAYKTPNWLLPTCFQNHGNYVISLSNVTRWLGQ 136 Query: 121 QAEALGVEIFPGFPAAEVLYHEDGSVKGVATGNMGINKEGEPGPEFQLGMELHAKYTFFA 180 QAEALGVEIFPGFPAAEVLYHEDGSVKGVATGNMGINKEGEPGPEFQLGMELHAKYTFFA Sbjct: 137 QAEALGVEIFPGFPAAEVLYHEDGSVKGVATGNMGINKEGEPGPEFQLGMELHAKYTFFA 196 Query: 181 EGARGHLGKQLISKYQLDAGRDPQTYAIGIKELWEVKPEVHQPGLVVHTAGWPLDNDTYG 240 EGARGHLGKQLISKYQLDAGRDPQTYAIGIKELWEVKPEVHQPGLVVHTAGWPLDNDTYG Sbjct: 197 EGARGHLGKQLISKYQLDAGRDPQTYAIGIKELWEVKPEVHQPGLVVHTAGWPLDNDTYG 256 Query: 241 GSFLYHLENNQVAVGYVVGLAYENPYLSPFEEFQRYKTHPEIRKFFEGGKRLSYGARAIT 300 GSFLYHLENNQVAVGYVVGLAYENPYLSPFEEFQRYKTHPEIRKFFEGGKRLSYGARAIT Sbjct: 257 GSFLYHLENNQVAVGYVVGLAYENPYLSPFEEFQRYKTHPEIRKFFEGGKRLSYGARAIT 316 Query: 301 AGGVQSLPKLVFPGGALLGCDAGFLNASRIKGSHAAIKSGMLAADAAFHALGENRQSDEL 360 AGGVQSLPKLVFPGGALLGCDAGFLNASRIKGSHAAIKSGMLAADAAFHALGENRQSDEL Sbjct: 317 AGGVQSLPKLVFPGGALLGCDAGFLNASRIKGSHAAIKSGMLAADAAFHALGENRQSDEL 376 Query: 361 SAYPAAFEPSWLKEELHKARNFKPSMSKGLVTGTLLVGIDQVLFGGKAPWTLRHSHADHE 420 SAYPAAFE SWLKEELHKARNFKPSMSKGLVTGTLLVGIDQVLFGGKAPWTLRHSHADHE Sbjct: 377 SAYPAAFEASWLKEELHKARNFKPSMSKGLVTGTLLVGIDQVLFGGKAPWTLRHSHADHE 436 Query: 421 CLKPASNYAPIAYPKPDGKLTFDRLSSVFISNTNHGEDQPAHLTLKDKNVPVQVNLAEYA 480 CLKPASNYAPIAYPKPDGKLTFDRLSSVFISNTNHGEDQPAHLTLKDKNVPVQVNLA+YA Sbjct: 437 CLKPASNYAPIAYPKPDGKLTFDRLSSVFISNTNHGEDQPAHLTLKDKNVPVQVNLAKYA 496 Query: 481 GPESRYCPAGVYEFVKNEDNTDRLQINAQNCVHCKTCDIKDPTQNIVWVTPEGGGGPNYS 540 GPESRYCPAGVYEFVKNEDNTDRLQINAQNCVHCKTCDIKDPTQNIVWVTPEGGGGPNYS Sbjct: 497 GPESRYCPAGVYEFVKNEDNTDRLQINAQNCVHCKTCDIKDPTQNIVWVTPEGGGGPNYS 556 Query: 541 GM 542 GM Sbjct: 557 GM 558 >gi|300312147|ref|YP_003776239.1| electron transfer flavoprotein [Herbaspirillum seropedicae SmR1] Length = 432 Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 102/395 (25%), Positives = 169/395 (42%), Gaps = 49/395 (12%) Query: 2 EYDVVVVGGGPAGLSAAIRLKQLAAQQNREVSVCVLEKGSEVGAHILSGAVMDPRALSEL 61 ++D +VVG GP+G + A + + + V +E+G G+ + GA++ AL + Sbjct: 4 KFDAIVVGAGPSGNACAYTMAKAG------LKVLQIERGEYPGSKNVQGAILYSDALERI 57 Query: 62 IPDWKEQGAPLNTPVTEDRFLFLSASK----AYKTPNWLLPTCFQNHGNYVISLSNVTRW 117 IPD++E APL + E R L Y++ ++ P + Y I + +W Sbjct: 58 IPDFRED-APLERHIIEQRMWVLDDQSFIGGHYRSEDFNKPP----YNRYTIIRAQFDKW 112 Query: 118 LGQQAEALGVEIFPGFPAAEVLYHEDGS-VKGVATGNMGINKEGEPGPEFQLGMELHAKY 176 Q+ + G + ++L DG V GV T ++G ++A Sbjct: 113 FSQKVQEAGALLICETTVTDLLM--DGQRVVGVQTD--------------RVGGSIYADI 156 Query: 177 TFFAEGARGHLGKQLISKYQLDAGRDPQTYAIGIKELWEVKPEV--------HQPGLVVH 228 A+G L ++ + +LD P A+ +KE+ + E G+V+ Sbjct: 157 VVLADGVNSVLARKAGFRPELD----PAEVALAVKEIHFMPEETIASRFNVSGDAGVVIE 212 Query: 229 TAGWPLDNDTYGGSFLYHLENNQVAVGYVVGLA-YENPYLSPFEEFQRYKTHPEIRKFFE 287 G + G FLY + V +G L+ + SP++ + K HP I E Sbjct: 213 MIG-KITKGMMGTGFLY-TNRDSVTIGVGCMLSDLKRQKCSPYQLLEDMKAHPAIAPLLE 270 Query: 288 GGKRLSYGARAITAGGVQSLPKLVFPGGALLGCDAGFLNASRIKGSHAAIKSGMLAADA- 346 GG+ Y A I GG S+P L G ++G F+NA +GS+ A+ SG LAA+ Sbjct: 271 GGEMKEYAAHLIPEGGYHSIPCLYGSGWIVVGDSGMFVNAVHREGSNLAMTSGRLAAETV 330 Query: 347 -AFHALGENRQSDELSAYPAAFEPSWLKEELHKAR 380 A A G L+ Y A S++ ++L K R Sbjct: 331 IALRAEGLPLTERNLARYRTALNESFVIKDLKKYR 365 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.136 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,934,593 Number of extensions: 87093 Number of successful extensions: 251 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 249 Number of HSP's successfully gapped: 2 Length of query: 542 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 452 Effective length of database: 1,193,720 Effective search space: 539561440 Effective search space used: 539561440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)