BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0318.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311091|ref|YP_003775183.1| allophanate hydrolase subunit 1...   399   e-113
gi|300313400|ref|YP_003777492.1| allophanate hydrolase subunit 1...    64   9e-12

>gi|300311091|ref|YP_003775183.1| allophanate hydrolase subunit 1
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  399 bits (1025), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/200 (99%), Positives = 200/200 (100%)

Query: 1   LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRPVVDLDILAHRIETTWPK 60
           LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRPVVDL+ILAHRIETTWPK
Sbjct: 17  LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRPVVDLEILAHRIETTWPK 76

Query: 61  LSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGFA 120
           LSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGFA
Sbjct: 77  LSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGFA 136

Query: 121 YMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQE 180
           YMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQE
Sbjct: 137 YMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQE 196

Query: 181 PPTLLRPGDRVRFTVERVAS 200
           PPTLLRPGDRVRFTVERVAS
Sbjct: 197 PPTLLRPGDRVRFTVERVAS 216


>gi|300313400|ref|YP_003777492.1| allophanate hydrolase subunit 1
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score = 63.9 bits (154), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 28/166 (16%)

Query: 62  SGERSVG-RTVEIPVVYGGS----------------AGPDLDNVARHTGLS-TEEVIARH 103
           + ER +  R +E+PV+Y                   +  DL   AR  G   T+  IA H
Sbjct: 89  TAERRIDTRIIEVPVLYDDPWTNETQSRFRDRHQDPSSTDLQYAARINGYDETQAFIAAH 148

Query: 104 SNAEYVVYFLGFLPGFAYMGGL---DASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMAS 160
           S   + V  +GF+ G  +M  +   D  L  P++  PR   P  ++G GG    +Y +  
Sbjct: 149 SGTPWFVSMVGFVAGLPFMYQMVEQDRQLQVPKYLRPRTDTPKLTLGHGGCFGCIYSVRG 208

Query: 161 PGGWQLIGRTTLQLFDPSQEPPTL------LRPGDRVRFT-VERVA 199
            GG+Q+ G T   ++DP Q  P L       R GD V+F  ++R A
Sbjct: 209 AGGYQMFGVTPAPIYDPQQGLPYLRESMVFFRAGDIVQFKPIDRTA 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 761,980
Number of extensions: 35043
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)