BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0313.p
         (334 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311086|ref|YP_003775178.1| hypothetical protein Hsero_1757...   568   e-163

>gi|300311086|ref|YP_003775178.1| hypothetical protein Hsero_1757
           [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score =  568 bits (1463), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 270/334 (80%), Positives = 293/334 (87%)

Query: 1   MQLTLERAEEFARMPLAYLRQEYPNHIMHLLNDESDVLSPRAMHPVFYGCYDWHSAVHGF 60
           MQLTLERAEEFARMPLAYLRQEYPNHIMH+LND  DVLSPRAMHPVFYGCYDWHSAVHGF
Sbjct: 1   MQLTLERAEEFARMPLAYLRQEYPNHIMHVLNDAGDVLSPRAMHPVFYGCYDWHSAVHGF 60

Query: 61  WLLLRCLRKYPSLAAADEISVLFDEHFTSELMERETDYFRAPNRTHFERPYGFGWLLALD 120
           WLLLRC+++YP L A  E+  +FDEHFT ELMERETDYFR   R  FERPYGFGW+LALD
Sbjct: 61  WLLLRCVQRYPELPARAEVEAIFDEHFTPELMERETDYFRVGGRASFERPYGFGWILALD 120

Query: 121 QELRMSSHPRAPQWQAAMTPLTAKIRRLLLDYLVKLSYPIRVGTHFNTAFALALSLDYAR 180
           QEL  S+ PRA  W+ AM PLT +IRR LL+YL KLSYPIRVGTH+NTAFALALSLD AR
Sbjct: 121 QELAQSTLPRAASWRTAMQPLTLEIRRRLLEYLSKLSYPIRVGTHYNTAFALALSLDQAR 180

Query: 181 YINDAELETAIVEWSQQHYGKDTDYPARYEPGGDEFISGALTEALLMSKVLSPDTFATWF 240
           ++ D ELE  I+  +Q++YGKDTDYPA YEPGGDE+ISGALTEALLMSKVLS   FA WF
Sbjct: 181 HVKDIELEQVILASAQRYYGKDTDYPAHYEPGGDEYISGALTEALLMSKVLSAQAFAAWF 240

Query: 241 DGYLPRIAEVSQLMHPAHVSDPTDPKVAHLDGLNLSRAWCMKTVLRHLPVGHAARSAIEA 300
           D YLPR+AE+ Q+M PA VSDPTDPK+AHLDGLNLSRAWCMKTVLRHLP GHAARSAIEA
Sbjct: 241 DQYLPRVAEIEQIMQPALVSDPTDPKIAHLDGLNLSRAWCMKTVLRHLPAGHAARSAIEA 300

Query: 301 AIQRHIAASIDQVVGSHYSGGHWLASFAMLALED 334
           AIQRHIAASIDQVVGSHYSGGHWLASFAMLALED
Sbjct: 301 AIQRHIAASIDQVVGSHYSGGHWLASFAMLALED 334


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,134,190
Number of extensions: 47726
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,212,660
Effective search space: 300739680
Effective search space used: 300739680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)