BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0305.p
         (500 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311079|ref|YP_003775171.1| N-acyl-D-glutamate deacylase [H...   363   e-101
gi|300309905|ref|YP_003773997.1| N-acyl-D-glutamate deacylase [H...   156   3e-39
gi|300309903|ref|YP_003773995.1| N-acyl-D-glutamate deacylase [H...    67   3e-12

>gi|300311079|ref|YP_003775171.1| N-acyl-D-glutamate deacylase
           [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score =  363 bits (931), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/189 (96%), Positives = 183/189 (96%), Gaps = 4/189 (2%)

Query: 1   MLSTTHAADGERRCDILIRHALVIDGSGAEPVAADVAVHKGRVAAIGKLDDWQAAQEIDA 60
           MLSTTHAADGERRCDILIRHALVIDGSGAEPVAADVAVHKGRVAAIGKLDDWQAAQEIDA
Sbjct: 1   MLSTTHAADGERRCDILIRHALVIDGSGAEPVAADVAVHKGRVAAIGKLDDWQAAQEIDA 60

Query: 61  SGRVLSPGFIDVHTHDDTNVIRTPEMFPKLSQGVTTVVVGNCGISAAPVTLKGEPPDPMN 120
           SGRVLSPGFIDVHTHDDTNVIRTPEMFPKLSQGVTTVVVGNCGISAAPVTLKGEPPDPMN
Sbjct: 61  SGRVLSPGFIDVHTHDDTNVIRTPEMFPKLSQGVTTVVVGNCGISAAPVTLKGEPPDPMN 120

Query: 121 LLGKREAFHYPSFASYVEAVNAARPAINVAALVGHTALRNNHMDRLDRAATESEIAGIYI 180
           LLGKREAFHYPSFASYVEAVNAARPAINVAALVGHTALRNNHMDRLDRAATESEIAG   
Sbjct: 121 LLGKREAFHYPSFASYVEAVNAARPAINVAALVGHTALRNNHMDRLDRAATESEIAG--- 177

Query: 181 YMRARARGA 189
            MRA+ R A
Sbjct: 178 -MRAQLREA 185


>gi|300309905|ref|YP_003773997.1| N-acyl-D-glutamate deacylase
           [Herbaspirillum seropedicae SmR1]
          Length = 498

 Score =  156 bits (395), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 108/164 (65%)

Query: 15  DILIRHALVIDGSGAEPVAADVAVHKGRVAAIGKLDDWQAAQEIDASGRVLSPGFIDVHT 74
           D+LI    +IDGS A    AD+ V  GR+A IG L   QAAQ IDASG++++PGFID HT
Sbjct: 8   DLLITGGTIIDGSKAPRFRADIGVRHGRIAEIGNLSHRQAAQRIDASGKIVAPGFIDSHT 67

Query: 75  HDDTNVIRTPEMFPKLSQGVTTVVVGNCGISAAPVTLKGEPPDPMNLLGKREAFHYPSFA 134
           HDD  V+  P+M  K+SQGVTTV+ GNCGIS AP+      P P++LL   +   + +F+
Sbjct: 68  HDDQAVLSQPDMTFKISQGVTTVITGNCGISIAPLRAGTPLPAPLSLLDDADGTRFETFS 127

Query: 135 SYVEAVNAARPAINVAALVGHTALRNNHMDRLDRAATESEIAGI 178
           SY++A+     A+NVAA+VGH+ LR   MD L+R A   EI+ +
Sbjct: 128 SYLDALRQTPSAVNVAAMVGHSTLRVMTMDALEREARPDEISAM 171


>gi|300309903|ref|YP_003773995.1| N-acyl-D-glutamate deacylase
           [Herbaspirillum seropedicae SmR1]
          Length = 550

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 6/97 (6%)

Query: 13  RCDILIRHALVIDGSGAEPVAADVAVHKGRVAAIGKLDD--WQAAQEIDASGRVLSPGFI 70
           + D++I+   + DG   EP++ ++ +   R+  +GK D   + A + IDA G +++PGFI
Sbjct: 47  QLDLIIQSDRIYDGEHDEPLSGELGIAGDRIVYVGKADRSRFTALRVIDARGAIVAPGFI 106

Query: 71  DVHTHDD----TNVIRTPEMFPKLSQGVTTVVVGNCG 103
           D HTH D    T+ I+  ++   L+QGVTT V+GN G
Sbjct: 107 DAHTHADRDMFTDDIKKRQVDYFLTQGVTTAVIGNDG 143


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,472,925
Number of extensions: 56936
Number of successful extensions: 246
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 3
Length of query: 500
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 411
Effective length of database: 1,198,455
Effective search space: 492565005
Effective search space used: 492565005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)