BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0301.p (448 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirill... 896 0.0 gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirill... 317 1e-87 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 88 2e-18 >gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirillum seropedicae SmR1] Length = 448 Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/448 (99%), Positives = 445/448 (99%) Query: 1 MSLPSPPTQDPAPAGAHYEALLRQAIDAHMAGRLDQACAIYEAVLEADPIHPLALHYYGI 60 MSLPSPPTQDPA AGAHYEALLRQAIDAHMAGRLDQACAIYEAVLEADPIHPLALHYYGI Sbjct: 1 MSLPSPPTQDPARAGAHYEALLRQAIDAHMAGRLDQACAIYEAVLEADPIHPLALHYYGI 60 Query: 61 WLHQDGQHDEALDKLELASALEPDNADWHNDRGNVLFALQQPALAEQAYADALALRPDDH 120 WLHQDGQHDEALDKLELASALEPDNADWHNDRGNVLFALQQPALAEQAYADALALRPDDH Sbjct: 61 WLHQDGQHDEALDKLELASALEPDNADWHNDRGNVLFALQQPALAEQAYADALALRPDDH 120 Query: 121 TIWNNLGAVLLQQDKRQDAISAFERALQIDPDFLPSLLHLGGIHEAAGDKMQASHYQCRA 180 TIWNNLGAVLLQQDKR DAISAFERALQIDPDFLPSLLHLGGIHEAAGDKMQASHYQCRA Sbjct: 121 TIWNNLGAVLLQQDKRPDAISAFERALQIDPDFLPSLLHLGGIHEAAGDKMQASHYQCRA 180 Query: 181 YVLPPLEGKSWEMLGISFYFLGRLPEAAEAYRAWLREEPDNPIAAHMLAACSQADVPPRA 240 YVLPPLEGKSWEMLGISFYFLGRLPEAAEAYRAWLREEPDNPIAAHMLAACSQADVPPRA Sbjct: 181 YVLPPLEGKSWEMLGISFYFLGRLPEAAEAYRAWLREEPDNPIAAHMLAACSQADVPPRA 240 Query: 241 SDRYIESHFDRYAETFEANLLQSLGYRGPRLIAEGLALIAPPARQFAAIDIGCGTGLCGG 300 SDRYIESHFDRYAETFEANLLQSLGYRGPRLIAEGLALIAPPA QFAAIDIGCGTGLCGG Sbjct: 241 SDRYIESHFDRYAETFEANLLQSLGYRGPRLIAEGLALIAPPAHQFAAIDIGCGTGLCGG 300 Query: 301 QVAPYSHHLVGVDLAGKMLEKAAATGHYARLEKAEIGHYLATHPQSCDLVTAADTMIYFG 360 QVAPYSHHLVGVDLAGKMLEKAAATGHYARLEKAEIGHYLATHPQSCDLVTAADTMIYFG Sbjct: 301 QVAPYSHHLVGVDLAGKMLEKAAATGHYARLEKAEIGHYLATHPQSCDLVTAADTMIYFG 360 Query: 361 DLAPVMQAVALALRSGGHFVFTVEALTGADVAPQGHALHASGRYRHGRDYVRGLLQAHGF 420 DLAPVMQAVALALRSGGHFVFTVEALTGADVAPQGHALHASGRYRHGRDYVRGLLQAHGF Sbjct: 361 DLAPVMQAVALALRSGGHFVFTVEALTGADVAPQGHALHASGRYRHGRDYVRGLLQAHGF 420 Query: 421 TLLHDSDQVLREEVRQPVAGMLFVARRA 448 TLLHDSDQ+LREEVRQPVAGMLFVARRA Sbjct: 421 TLLHDSDQILREEVRQPVAGMLFVARRA 448 >gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirillum seropedicae SmR1] Length = 439 Score = 317 bits (813), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 195/417 (46%), Positives = 252/417 (60%), Gaps = 5/417 (1%) Query: 32 GRLDQACAIYEAVLEADPIHPLALHYYGIWLHQDGQHDEALDKLELASALEPDNADWHND 91 GRL++A Y L + H HY G+ LHQ G+H+E + + A+ P +ADW ND Sbjct: 27 GRLEEAEEDYRVTLAMEEHHAPTQHYLGMLLHQRGRHEEGVTLMRQAALAAPADADWCND 86 Query: 92 RGNVLFALQQPALAEQAYADALALRPDDHTIWNNLGAVLLQQDKRQDAISAFERALQIDP 151 GNVLFA + A QAY ALALRPDD +W NLGA Q + Q AI+A E+AL P Sbjct: 87 IGNVLFACSRFDEAAQAYQQALALRPDDAQLWTNLGATRRAQGQHQAAIAACEQALATAP 146 Query: 152 DFLPSLLHLGGIHEAAGDKMQASHYQCRAYVLPPLEGKSWEMLGISFYFLGRLPEAAEAY 211 L +L L IH GD+MQ+S YQC A+VLPP EGKS E+L ISFYFLGR+ EAAE Sbjct: 147 HSLAALHQLAEIHAHLGDRMQSSRYQCMAFVLPPHEGKSRELLAISFYFLGRVAEAAEVC 206 Query: 212 RAWLREEPDNPIAAHMLAACSQADVPPRASDR-YIESHFDRYAETFEANLLQSLGYRGPR 270 R WL+EEP +PIA HM AA A +P R YI FD YA+ F++NL+ L YRGP+ Sbjct: 207 RRWLQEEPGHPIANHMHAA--YAGLPSHTVPRDYIVRRFDDYADHFDSNLVTHLDYRGPQ 264 Query: 271 LIAEGLALIAPPARQFAAIDIGCGTGLCGGQVAPYSHHLVGVDLAGKMLEKAAATGHYAR 330 ++ L P +D GCGTGLC +APY+ L GVDL+ ML AA G Y+ Sbjct: 265 VLNAVLQASLPANADMRVLDAGCGTGLCAPVLAPYALSLEGVDLSSNMLRHAAQHGRYST 324 Query: 331 LEKAEIGHYLATHPQSCDLVTAADTMIYFGDLAPVMQAVALALRSGGHFVFTVEALTGAD 390 L +A++ ++ HP L+ A D +IY G LA A LAL+ GGH VFTVE L GA+ Sbjct: 325 LAQADVVEWMTAHPSRYALIAACDVLIYCGQLASFFTAAQLALQEGGHLVFTVE-LAGAE 383 Query: 391 VAPQGHALHASGRYRHGRDYVRGLLQAHGFTLLHDSDQVLREEVRQPVAGMLFVARR 447 P + LHASGR+RH R Y+ L A G ++ ++ LR E++Q V G++ +ARR Sbjct: 384 -RPDSYYLHASGRFRHQRAYIEDCLHAAGMQVVMLREESLRVEMQQAVPGLVVLARR 439 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/193 (35%), Positives = 96/193 (49%), Gaps = 1/193 (0%) Query: 28 AHMAGRLDQACAIYEAVLEADPIHPLALHYYGIWLHQDGQHDEALDKLELASALEPDNAD 87 AH+ GR D+A A Y+ VL + AL G L + G++ EAL LE A+AL PDNAD Sbjct: 87 AHL-GRDDEAVARYDLVLTVNADFVEALLARGAALRRLGRNREALADLERATALAPDNAD 145 Query: 88 WHNDRGNVLFALQQPALAEQAYADALALRPDDHTIWNNLGAVLLQQDKRQDAISAFERAL 147 RGNVL A ++Y A+ALRPD W NLG ++ A+ A++RAL Sbjct: 146 AWFQRGNVLHDSYAYGDARESYERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYDRAL 205 Query: 148 QIDPDFLPSLLHLGGIHEAAGDKMQASHYQCRAYVLPPLEGKSWEMLGISFYFLGRLPEA 207 ++ PDF ++ + G + +A RA L W G + L R EA Sbjct: 206 EVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALALDERAPDLWFNRGSTLEQLYRFEEA 265 Query: 208 AEAYRAWLREEPD 220 +E+YR +PD Sbjct: 266 SESYRRAKALKPD 278 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,578,974 Number of extensions: 71526 Number of successful extensions: 286 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 269 Number of HSP's successfully gapped: 4 Length of query: 448 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 360 Effective length of database: 1,203,190 Effective search space: 433148400 Effective search space used: 433148400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)