BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0299.p (516 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311074|ref|YP_003775166.1| transcription regulator protein... 1059 0.0 gi|300311016|ref|YP_003775108.1| MocR family transcription regul... 355 7e-99 gi|300311139|ref|YP_003775231.1| MocR family transcription regul... 152 8e-38 gi|300310416|ref|YP_003774508.1| MocR family transcription regul... 133 4e-32 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 126 4e-30 >gi|300311074|ref|YP_003775166.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 1059 bits (2739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 514/516 (99%), Positives = 515/516 (99%) Query: 1 MIAVMDTSLLIADASGVAATPTAPTTPASLLPSAPESGRQPLYRRLADHYQSAIQAGTLV 60 MIAVMDTSLLIADASG AATPTAPTTPASLLPSAPESGRQPLYRRLADHYQSAIQAGTLV Sbjct: 1 MIAVMDTSLLIADASGAAATPTAPTTPASLLPSAPESGRQPLYRRLADHYQSAIQAGTLV 60 Query: 61 AGDRMPSVRDLMRQHQVSLSTALQTLRHMEEGGWLEARPRSGYFVRQPRRSAIRPVQEPK 120 AGDRMPSVRDLMRQHQVSLSTALQTLRHMEEGGWLEARPRSGYFVRQPRRSAIRPVQEPK Sbjct: 61 AGDRMPSVRDLMRQHQVSLSTALQTLRHMEEGGWLEARPRSGYFVRQPRRSAIRPVQEPK 120 Query: 121 SLLAIDAGQFVGIHERVSKYIALRQAGAPHIDLSGMTCAPQLYAVETLKQAAMRALRERP 180 SLLAIDAGQFVGIHERVSKYIALRQAGAPHIDLSGMTCAPQLYAVETLKQAAMRALRERP Sbjct: 121 SLLAIDAGQFVGIHERVSKYIALRQAGAPHIDLSGMTCAPQLYAVETLKQAAMRALRERP 180 Query: 181 ELLTSAMPHNGNATFRQAVARRALNAGMRIDTEEVVVTHGCIEALNLALRAVAGPGDTIA 240 ELLTSAMPHNGNATFRQAVARRALNAGMRIDTEEVVVTHGCIEALNLA+RAVAGPGDTIA Sbjct: 181 ELLTSAMPHNGNATFRQAVARRALNAGMRIDTEEVVVTHGCIEALNLAMRAVAGPGDTIA 240 Query: 241 VESPTYFGLLQALENLGMKALEIPTSPHTGISVEALELAVRTYGNIKAVVVVPNLQNPLG 300 VESPTYFGLLQALENLGMKALEIPTSPHTGISVEALELAVRTYGNIKAVVVVPNLQNPLG Sbjct: 241 VESPTYFGLLQALENLGMKALEIPTSPHTGISVEALELAVRTYGNIKAVVVVPNLQNPLG 300 Query: 301 CIMPEDHKDQLVRLCDQLKLPLIEDDAYTELADGSVTPSSLKSRDRNGNVIYCASLNKVL 360 CIMPEDHKDQLVRLCDQLKLPLIEDDAYTELADGSVTPSSLKSRDRNGNVIYCASLNKVL Sbjct: 301 CIMPEDHKDQLVRLCDQLKLPLIEDDAYTELADGSVTPSSLKSRDRNGNVIYCASLNKVL 360 Query: 361 APGMRLGWMNGGRWHERVKMLKFTHTRANEEWTQVTAADFIASPAYDRHLRRLRQMLKQQ 420 APGMRLGWMNGGRWHERVKMLKFTHTRANEEWTQVTAADFIASPAYDRHLRRLRQMLKQQ Sbjct: 361 APGMRLGWMNGGRWHERVKMLKFTHTRANEEWTQVTAADFIASPAYDRHLRRLRQMLKQQ 420 Query: 421 RERMAESIAAYFPEGTRLNLPNGGVGLWVELPVQVCSQQLFERALAEGVGVSPGAIFSNS 480 RERMAESIAAYFPEGTRLNLPNGGVGLWVELPVQVCSQQLFERALAEGVGVSPGAIFSNS Sbjct: 421 RERMAESIAAYFPEGTRLNLPNGGVGLWVELPVQVCSQQLFERALAEGVGVSPGAIFSNS 480 Query: 481 SRYGHFVRICCGHPFNRELDQALRRLGGLVHHLADA 516 SRYGHFVRICCGHPFNRELDQALRRLGGLVHHLADA Sbjct: 481 SRYGHFVRICCGHPFNRELDQALRRLGGLVHHLADA 516 >gi|300311016|ref|YP_003775108.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 480 Score = 355 bits (910), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 195/484 (40%), Positives = 297/484 (61%), Gaps = 19/484 (3%) Query: 41 PLYRRLADHYQSAIQAGTLVAGDRMPSVRDLMRQHQVSLSTALQTLRHMEEGGWLEARPR 100 PLY++ AD ++I+ G L G+R+ SVR +QH+VS++T ++ +E G +E++P+ Sbjct: 5 PLYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQ 64 Query: 101 SGYFVRQ----PRRSAIRPVQEP-----KSLLAIDAGQFVGIHERVSKYIALRQAGAPHI 151 SGYFVR+ P + A+R + +D + V ++ ++Q G + Sbjct: 65 SGYFVREQPEAPPKPALRTTSREDHPAWQESTEVDVSRLV-----LATLKTIQQDGT--V 117 Query: 152 DLSGMTCAPQLYAVETLKQAAMRALRERPEL-LTSAMPHNGNATFRQAVARRALNAGMRI 210 L P L+ L Q A R R + + +P RQ +ARR L G+++ Sbjct: 118 PLGSPYPNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPELLRQ-IARRYLENGLKV 176 Query: 211 DTEEVVVTHGCIEALNLALRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPHTG 270 D EE+V+T G EA+NL L+AVA PGDTIAVE+PT++ +L A+E LGM+ALEIPT P G Sbjct: 177 DPEEIVITVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRG 236 Query: 271 ISVEALELAVRTYGNIKAVVVVPNLQNPLGCIMPEDHKDQLVRLCDQLKLPLIEDDAYTE 330 I V ALE ++T I A +V+PN QNPLG MP+ K++LVRL +Q ++P+IE+ Y+E Sbjct: 237 IDVGALEERMKTQA-IAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPVIENAVYSE 295 Query: 331 LADGSVTPSSLKSRDRNGNVIYCASLNKVLAPGMRLGWMNGGRWHERVKMLKFTHTRANE 390 L G+ PSSLK+ DR+G V++C+S +K L R+GW GR+ +V+ LKF +T A Sbjct: 296 LYYGNAHPSSLKNYDRDGLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTLATP 355 Query: 391 EWTQVTAADFIASPAYDRHLRRLRQMLKQQRERMAESIAAYFPEGTRLNLPNGGVGLWVE 450 Q A+++ Y+RHLRR+R+ QQR+ M + +FP GT+++ P GG LWVE Sbjct: 356 TAPQRAIAEYLTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVE 415 Query: 451 LPVQVCSQQLFERALAEGVGVSPGAIFSNSSRYGHFVRICCGHPFNRELDQALRRLGGLV 510 LP V + +L+ R+LA G+ V+PG IF+ ++RY HF+R+ + +++E +QAL+ +G LV Sbjct: 416 LPQGVDAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYAWSKETEQALKLVGKLV 475 Query: 511 HHLA 514 LA Sbjct: 476 EELA 479 >gi|300311139|ref|YP_003775231.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 398 Score = 152 bits (383), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 106/363 (29%), Positives = 175/363 (48%), Gaps = 13/363 (3%) Query: 153 LSGMTCAPQLYAVETLKQAAMRALRERPELLTSAMPHNGNATFRQAVARRALNAGMRIDT 212 +G +P + VE +K A R L ++ ++ P +G R+ +A G +I Sbjct: 40 FAGGLPSPLTFPVEHMKTAFDRVLSQQGKMALQYGPTDGYLPLREWIAASLSTNGAQISA 99 Query: 213 EEVVVTHGCIEALNLALRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPHTGIS 272 E+V++ G + L+L + + G + VE+P+Y G LQA G K +P S G+ Sbjct: 100 EQVLMVSGSQQGLDLLGKVLIDEGSKVLVETPSYLGALQAFALYGAKFESVP-SDEFGLQ 158 Query: 273 VEALELAVRTYGNIKAVVVVPNLQNPLGCIMPEDHKDQLVRLCDQLKLPLIEDDAYTELA 332 E +E G + + +PN QNP G +P + + +LV C +L LPLIEDD Y L+ Sbjct: 159 PETIEAIA---GGARMLYSLPNFQNPTGRTLPTERRFKLVETCARLGLPLIEDDPYGALS 215 Query: 333 DGSVTPSSLKSRDRNGNVIYCASLNKVLAPGMRLGWMNGGR----WHERVKMLKFTHTRA 388 + + S + +G VIY S +KVL PG+RLG++ R E+ K HT Sbjct: 216 YQNAPLPKMLSMNPSG-VIYMGSFSKVLTPGIRLGYVVAPRPLILKMEQAKQATDLHT-- 272 Query: 389 NEEWTQVTAADFIASPAYDRHLRRLRQMLKQQRERMAESIAAYFPEGTRLNLPNGGVGLW 448 + TQ+ + I D+H+ +R++ Q + M +++ YFP + P GG+ +W Sbjct: 273 -AQLTQMVVYEAIKDGFLDQHVPTIRKLYGDQCQAMLDALQQYFPASCSWSKPEGGMFIW 331 Query: 449 VELPVQVCSQQLFERALA-EGVGVSPGAIFSNSSRYGHFVRICCGHPFNRELDQALRRLG 507 V LP + + L A+ E V PGA F + + +R+ ++ + RLG Sbjct: 332 VTLPEHIDAGALLNEAVEQEKVAFVPGAPFYANVAQKNTLRLSFVTVPPEQIRAGVERLG 391 Query: 508 GLV 510 L+ Sbjct: 392 KLI 394 >gi|300310416|ref|YP_003774508.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 133 bits (334), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 135/510 (26%), Positives = 234/510 (45%), Gaps = 51/510 (10%) Query: 33 SAPESG------RQPLYRRLADHYQSAIQAGTLVAGDRMPSVRDLMRQHQVSLSTALQTL 86 SAPESG R P+ R++ + AI A TL AG ++PS RDL + S +T Sbjct: 30 SAPESGAAKPAPRTPVNRQIYQLIREAILAHTLPAGMQLPSSRDLALELGSSRNTVTYAY 89 Query: 87 RHMEEGGWLEARPRSGYFVRQPRRSAI-------RPVQEPKSLLAIDA-GQFVGIHERVS 138 + G+LE+RP +G FV I P+ +P + A G + V Sbjct: 90 EQLLAEGYLESRPGAGTFVADTAPDQIPEAVERPEPLTDPSGKSELSARGAMLTRQAGVG 149 Query: 139 KYIALRQAGAPHIDLSGMTCAPQLYAV-ETLKQAAMRALRERPELLTSAMPHNGNATFRQ 197 + RQ GA + +TC P Y + L+ R R +LLT P G A R+ Sbjct: 150 E----RQWGAFMPGVPDVTCVP--YKIWGRLQNKHWR--RSNADLLTYG-PGAGYAGLRE 200 Query: 198 AVAR-----RALNAGMRIDTEEVVVTHGCIEALNLALRAVAGPGDTIAVESPTYFGLLQA 252 +A R++N +V++T G ++L++ ++ + GD+ VE P Y+G Sbjct: 201 QIAEYLRVARSVNC----TPSQVLITTGIHQSLDIVVKLLGEHGDSAWVEDPCYWGTRSV 256 Query: 253 LENLGMKALEIPTSPHTGISVEALELAVRTYGNIK----AVVVVPNLQNPLGCIMPEDHK 308 L +LG++++ I + E + + + N++ + P+ Q PLG +M + Sbjct: 257 LNSLGIQSVPI------AVDQEGMRMRL---ANLRRPPRFICTTPSHQYPLGMVMSLSRR 307 Query: 309 DQLVRLCDQLKLPLIEDDAYTELADGSVTPSSLKSRDRNGNVIYCASLNKVLAPGMRLGW 368 L+ K+ +IEDD +E G +SL+ D V+Y + +K++ PG+R+G+ Sbjct: 308 RMLLEYAATHKVWIIEDDYDSEFRYGGRPLASLQGMDTQDRVLYMGTFSKIMFPGLRIGF 367 Query: 369 MNGGRWHERVKMLKFTH-TRANEEWTQVTAADFIASPAYDRHLRRLRQMLKQQRERMAES 427 + R R + + Q T ADF+A + H+R++R + ++ + + +S Sbjct: 368 LVVPESLARAFSTGIAELYRNGQVFLQATLADFMAEGHFASHIRKMRVLYAERLQLLQQS 427 Query: 428 IAAYFPEGTRLNLPNGGVGLWVELPVQVCSQQLFERALAEGVGVSPGAIFSNSSRYGHFV 487 I +F E + G+ L + LP + + E+ALA G+ V P + + +R G Sbjct: 428 INRHFGEKMTITGGEAGLHLVLGLPQECDDVLICEQALAAGIVVRPLSRYYMHAR-GARR 486 Query: 488 RICCGHPF--NRELDQALRRLGGLVH-HLA 514 + G+ N E+ +A +L ++ HLA Sbjct: 487 GLLLGYASVPNDEIARAFDKLAAVIKPHLA 516 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 126 bits (317), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 119/472 (25%), Positives = 209/472 (44%), Gaps = 27/472 (5%) Query: 42 LYRRLADHYQSAIQAGTLVAGDRMPSVRDLMRQHQVSLSTALQTLRHMEEGGWLEARPRS 101 L ++A+ I+ G L +G+R+PSVR + H + ST ++ + G L+AR + Sbjct: 21 LVEQVANGLAGLIETGELRSGERLPSVRQFAQHHDIGSSTVVEAYEQLVARGMLQARRGA 80 Query: 102 GYFVR----QPRRSAIRPVQEPKSLLAIDAGQFVGIHERVSKYIALRQAGAPHIDLSGMT 157 G+FV Q + A+ EP ID+ + E + +AG + + Sbjct: 81 GFFVAARAGQSGQHAVFVPPEP----VIDSAWL--LSEMFADERVPIKAGCGWLPGKWLN 134 Query: 158 CAPQLYAVETLKQAAMRALRERPELLTSAMPH-NGNATFRQAVARRALNAGMRIDTEEVV 216 E L QA R +R P H G A RQ + + + + + E+V+ Sbjct: 135 D-------EGLHQAERRIIRS-PGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIEQVL 186 Query: 217 VTHGCIEALNLALRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPHTGISVEAL 276 THG +AL+L +R + PGDT+ ++ P Y L+ L G+ + +P +P G+ + L Sbjct: 187 TTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVPRTP-GGVDTDVL 245 Query: 277 ELAVRTYGNIKAVVVVPNLQNPLGCIMPEDHKDQLVRLCDQLKLPLIEDDAYTELADGSV 336 E RT+ + K LQNP G ++++ ++ ++EDD + EL G Sbjct: 246 ETLARTH-HPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFREL--GQA 302 Query: 337 TPSSLKSRDRNGNVIYCASLNKVLAPGMRLGWMNGGRWHER-VKMLKFTHTRANEEWTQV 395 T L + D VIY S +K +AP +R+G++ R R + K T N E + Sbjct: 303 TDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINER 362 Query: 396 TAADFIASPAYDRHLRRLRQMLKQQRERMAESIAAYFPEGTRLNLPNGGVGLWVELP-VQ 454 + + + RH++ L L + + ++ T GG+ W + + Sbjct: 363 LVHNVLTEGHHRRHVQTLNATLLSAQATLNAKLSEV--GLTPFTAARGGMFSWATIEGCE 420 Query: 455 VCSQQLFERALAEGVGVSPGAIFSNSSRYGHFVRICCGHPFNRELDQALRRL 506 + ++++ +RA +G+ ++PG F S+ + R G+ EL LR L Sbjct: 421 LSAREIADRARQKGIWLAPGDFFHLSAPHQTSFRFNVGYADVPELFDFLRGL 472 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,548,168 Number of extensions: 62597 Number of successful extensions: 295 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 281 Number of HSP's successfully gapped: 10 Length of query: 516 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 427 Effective length of database: 1,198,455 Effective search space: 511740285 Effective search space used: 511740285 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)