BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0290.p
         (213 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313100|ref|YP_003777192.1| ketol-acid reductoisomerase oxi...   441   e-125
gi|300311066|ref|YP_003775158.1| ketol-acid reductoisomerase oxi...   440   e-125

>gi|300313100|ref|YP_003777192.1| ketol-acid reductoisomerase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 338

 Score =  441 bits (1133), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/213 (100%), Positives = 213/213 (100%)

Query: 1   MIAPKAPGHTVRSTYSQGGGVPHLIAVHQDKSGSARDLALSYATANGGGRAGIIETNFRE 60
           MIAPKAPGHTVRSTYSQGGGVPHLIAVHQDKSGSARDLALSYATANGGGRAGIIETNFRE
Sbjct: 126 MIAPKAPGHTVRSTYSQGGGVPHLIAVHQDKSGSARDLALSYATANGGGRAGIIETNFRE 185

Query: 61  ETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYEGGIAN 120
           ETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYEGGIAN
Sbjct: 186 ETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYEGGIAN 245

Query: 121 MNYSISNNAEYGEYVTGPRVINAESKAAMKKVLEDIQTGEYAKSFILENKAGAPTLMSRR 180
           MNYSISNNAEYGEYVTGPRVINAESKAAMKKVLEDIQTGEYAKSFILENKAGAPTLMSRR
Sbjct: 246 MNYSISNNAEYGEYVTGPRVINAESKAAMKKVLEDIQTGEYAKSFILENKAGAPTLMSRR 305

Query: 181 RINAEHQIEIVGEKLRAMMPWIKANKLVDQSKN 213
           RINAEHQIEIVGEKLRAMMPWIKANKLVDQSKN
Sbjct: 306 RINAEHQIEIVGEKLRAMMPWIKANKLVDQSKN 338


>gi|300311066|ref|YP_003775158.1| ketol-acid reductoisomerase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 338

 Score =  440 bits (1132), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/213 (100%), Positives = 213/213 (100%)

Query: 1   MIAPKAPGHTVRSTYSQGGGVPHLIAVHQDKSGSARDLALSYATANGGGRAGIIETNFRE 60
           MIAPKAPGHTVRSTYSQGGGVPHLIAVHQDKSGSARDLALSYATANGGGRAGIIETNFRE
Sbjct: 126 MIAPKAPGHTVRSTYSQGGGVPHLIAVHQDKSGSARDLALSYATANGGGRAGIIETNFRE 185

Query: 61  ETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYEGGIAN 120
           ETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYEGGIAN
Sbjct: 186 ETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYEGGIAN 245

Query: 121 MNYSISNNAEYGEYVTGPRVINAESKAAMKKVLEDIQTGEYAKSFILENKAGAPTLMSRR 180
           MNYSISNNAEYGEYVTGPRVINAESKAAMKKVLEDIQTGEYAKSFILENKAGAPTLMSRR
Sbjct: 246 MNYSISNNAEYGEYVTGPRVINAESKAAMKKVLEDIQTGEYAKSFILENKAGAPTLMSRR 305

Query: 181 RINAEHQIEIVGEKLRAMMPWIKANKLVDQSKN 213
           RINAEHQIEIVGEKLRAMMPWIKANKLVDQSKN
Sbjct: 306 RINAEHQIEIVGEKLRAMMPWIKANKLVDQSKN 338


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 662,071
Number of extensions: 26130
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 213
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 132
Effective length of database: 1,236,335
Effective search space: 163196220
Effective search space used: 163196220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)