BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0281.p
         (290 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311061|ref|YP_003775153.1| transmembrane protein [Herbaspi...   404   e-114

>gi|300311061|ref|YP_003775153.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score =  404 bits (1039), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 239/260 (91%), Positives = 241/260 (92%), Gaps = 2/260 (0%)

Query: 1   MRKTTGTSVKAPARLSRIALALAVLAGGLSCAWTVAQNAPAEPAAPTAAAAAPAAAPAPA 60
           MRKTTGTSVKAPARLSRIALALAVLAGGLSCAWTVAQNAPAEPAAPTAAAA PAAAPAPA
Sbjct: 1   MRKTTGTSVKAPARLSRIALALAVLAGGLSCAWTVAQNAPAEPAAPTAAAATPAAAPAPA 60

Query: 61  PATSATPAAPVTPPAAAAAHPPA--KSGVKSTARKSDNQLAWTNLSAAQRQALEPLTTEW 118
           PA + +          AAA      KSGVKSTARKSDNQLAWTNLSAAQRQALEPLTTEW
Sbjct: 61  PAPATSATPAAPVTPPAAATAHPPAKSGVKSTARKSDNQLAWTNLSAAQRQALEPLTTEW 120

Query: 119 PRMSELQKEKWLEIGKRYARMKPEEQQRLHERMRDWVKLTPAERSAARTNYARAKKLDAE 178
           PRMSELQKEKWLEIGKRYARMKPEEQQRLHERMRDWVKLTPAERSAARTNYARAKKLDAE
Sbjct: 121 PRMSELQKEKWLEIGKRYARMKPEEQQRLHERMRDWVKLTPAERSAARTNYARAKKLDAE 180

Query: 179 EKHEQWAKYQQLSEEQKKKLSEAKLPKRVAKLPTSPSAAAPTIQLPAEALDRPLPVVPAP 238
           EKHEQWAKYQQLSEEQKKKLSEAKLPKRVAKLPTSPSAAAPTIQLPAEALDRPLPVVPAP
Sbjct: 181 EKHEQWAKYQQLSEEQKKKLSEAKLPKRVAKLPTSPSAAAPTIQLPAEALDRPLPVVPAP 240

Query: 239 TPAIAPVAPALVPGSQAAPQ 258
           TPAIAPVAPALVPGSQAAPQ
Sbjct: 241 TPAIAPVAPALVPGSQAAPQ 260


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.308    0.119    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 508,965
Number of extensions: 16465
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,222,130
Effective search space: 251758780
Effective search space used: 251758780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 130 (54.7 bits)