BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0265.p
         (414 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313119|ref|YP_003777211.1| glycolate oxidase iron-sulfur s...   859   0.0  
gi|300313195|ref|YP_003777287.1| oxidoreductase [Herbaspirillum ...    65   8e-12

>gi|300313119|ref|YP_003777211.1| glycolate oxidase iron-sulfur
           subunit oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/414 (99%), Positives = 413/414 (99%)

Query: 1   MQTNLADFIRNTQAGQEADSILRSCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLE 60
           MQTNLADFIRNTQAGQEADSILRSCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLE
Sbjct: 1   MQTNLADFIRNTQAGQEADSILRSCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLE 60

Query: 61  GKPATAATQSHLDRCLTCRNCESTCPSGVQYGRLVDIGRKVVEEQVPRPLSQRVMRTALK 120
           GKPATAATQSHLDRCLTCRNCESTCPSGVQYGRLVDIGRKVVEEQVPRPLSQRVMRTALK
Sbjct: 61  GKPATAATQSHLDRCLTCRNCESTCPSGVQYGRLVDIGRKVVEEQVPRPLSQRVMRTALK 120

Query: 121 ELVPRKWIFRPAMKAGQMLRPLLPKLLQNKVPLPQEAGVWPTRTHARQMLYLEGCVQPSM 180
           ELVPRKWIFRPAMKAGQMLRPLLPKLLQNKVPLPQEAG WPTRTHARQMLYLEGCVQPSM
Sbjct: 121 ELVPRKWIFRPAMKAGQMLRPLLPKLLQNKVPLPQEAGAWPTRTHARQMLYLEGCVQPSM 180

Query: 181 SPNINSATARVLDALGVQLFAPPKAGCCGAIRYHMNDQEGGLEDMRRNIDAWWPYIEGRD 240
           SPNINSATARVLDALGVQLFAPPKAGCCGAIRYHMNDQEGGLEDMRRNIDAWWPYIEGRD
Sbjct: 181 SPNINSATARVLDALGVQLFAPPKAGCCGAIRYHMNDQEGGLEDMRRNIDAWWPYIEGRD 240

Query: 241 GIRADTIVMNASGCGSTVKEYGHLLQHDPVYAEKARRISHMTRDISEILPEFEEALKHKL 300
           GIRADTIVMNASGCGSTVKEYGHLLQHDPVYAEKARRISHMTRDISEILPEFEEALKHKL
Sbjct: 241 GIRADTIVMNASGCGSTVKEYGHLLQHDPVYAEKARRISHMTRDISEILPEFEEALKHKL 300

Query: 301 KDFNGKRVAYHPPCTLQHGQKIRGKVEGILRAAGVDVQLCADSHLCCGSAGTYSILQPEL 360
           KDFNGKRVAYHPPCTLQHGQKIRGKVEGILRAAGVDVQLCADSHLCCGSAGTYSILQPEL
Sbjct: 301 KDFNGKRVAYHPPCTLQHGQKIRGKVEGILRAAGVDVQLCADSHLCCGSAGTYSILQPEL 360

Query: 361 SYRLRDNKISKLQATDPDMIVTGNIGCVTHLQSGTDTPVRHWIELLDAALQAPS 414
           SYRLRDNKISKLQATDPDMIVTGNIGCVTHLQSGTDTPVRHWIELLDAALQAPS
Sbjct: 361 SYRLRDNKISKLQATDPDMIVTGNIGCVTHLQSGTDTPVRHWIELLDAALQAPS 414


>gi|300313195|ref|YP_003777287.1| oxidoreductase [Herbaspirillum
            seropedicae SmR1]
          Length = 1333

 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 90/439 (20%), Positives = 161/439 (36%), Gaps = 82/439 (18%)

Query: 20   SILRSCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGKPATAATQSHL------- 72
            S ++ C+ CG C   C T+    + L  PR +I     ++E       T+  +       
Sbjct: 859  SSVKDCLRCGKCKPVCSTHVPRANLLYSPRNKILATSLLVEAFLYEEQTRRGVSIKHWEE 918

Query: 73   -----DRCLTCRNCESTCPSGVQYGRL--------------------------------- 94
                 D C  C  C + CP  + +G +                                 
Sbjct: 919  FEDVADHCTVCHKCVTPCPVDIDFGDVSMNMRNLLRKMGKKSFNAGTNAAMFFLNATDPA 978

Query: 95   -VDIGRKVVEEQVPRPLSQRVMRTALKELVPRKWIFRPAMKAGQMLRPLLPKLLQNKVP- 152
             ++  RKV+ +   +  +QR+    +K+   ++    PA      ++  +   +  K+P 
Sbjct: 979  TINATRKVMTQWGFK--AQRLGNDLMKKFAKKQTQKPPATVGKPPVKEQVIHFINKKMPG 1036

Query: 153  -LPQEAG----------VWP-------TRTHARQMLYLEGCVQPSMSPNINSATARVLDA 194
             LP++            + P       T      + Y  GC    +   +  AT  +L  
Sbjct: 1037 NLPKKTARALLDIEDDKIVPIIRNPKTTTADTEAVFYFPGCGSERLFSQVGLATQAMLWN 1096

Query: 195  LGVQLFAPPKAGCCGAIRYHMNDQEGGLEDMRRNIDAWWPYIEGRDGIRADTIVMNASGC 254
            +GVQ   PP   CCG  +    D E G + +  N   +       + +   T+V++   C
Sbjct: 1097 VGVQTVLPPGYLCCGYPQRGTGDFEKGEKIITDNRVLFHRMANTLNYLDIKTVVVSCGTC 1156

Query: 255  GSTVKEYGHLLQHDPVYAEKARRISHMTRDISEILPEFEEALKHKLKDFNGKRVAYHPPC 314
               ++ Y    + + ++    R I     DI E L   E+ +K  L+   G R  YH PC
Sbjct: 1157 YDQLQGY----EFEKIFP-GCRII-----DIHEYL--LEKGVK--LEGVTGTRYMYHDPC 1202

Query: 315  TLQHGQKIRGKVEGILRAAGVDVQLCADSHLCCGSAGTYSILQPELSYRLRDNKISKLQA 374
                 Q+   K    L    +D Q    +  CCG +GT+ + +P++S ++R  K  +++ 
Sbjct: 1203 HSPMKQQDPLKTVNSL-ITTIDAQKIEKNDRCCGESGTFGVSRPDVSTQVRFRKEEEMRK 1261

Query: 375  TDPDMIVTGNIGCVTHLQS 393
                +   G  G V  L S
Sbjct: 1262 GSDKVRADGFTGDVKILTS 1280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,313,598
Number of extensions: 55457
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 2
Length of query: 414
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,203,190
Effective search space: 392239940
Effective search space used: 392239940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)