BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0264.p
         (359 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313120|ref|YP_003777212.1| glycolate oxidase iron-sulfur s...   712   0.0  
gi|300313123|ref|YP_003777215.1| D-lactate dehydrogenase [Herbas...    65   6e-12

>gi|300313120|ref|YP_003777212.1| glycolate oxidase iron-sulfur
           subunit oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/359 (99%), Positives = 357/359 (99%)

Query: 1   MQEQAQQDLDAVLASFRERILAGRPLQIRGGGTKDWYGQTPSGELLDTRAYSGIIDYEPT 60
           MQEQAQQDLDAVLASFRERILAGRPLQIRGGGTKDWYGQTPSGELLDTRAYSGIIDYEPT
Sbjct: 1   MQEQAQQDLDAVLASFRERILAGRPLQIRGGGTKDWYGQTPSGELLDTRAYSGIIDYEPT 60

Query: 61  ELVITARCGTPLSEIDAALAQHNQMLAWEPPRFGGAVTVGGMVAAGLSGPARASAGAVRD 120
           ELVITARCGTPLSEIDAALAQHNQMLAWEPP FGGA TVGGMVAAGLSGPARASAGAVRD
Sbjct: 61  ELVITARCGTPLSEIDAALAQHNQMLAWEPPSFGGAATVGGMVAAGLSGPARASAGAVRD 120

Query: 121 FVLGAVLMDAQGEPLHFGGQVMKNVAGYDISRLLAGSLGTLGLILEVSLKVLPRPIASST 180
           FVLGAVLMDAQGEPLHFGGQVMKNVAGYDISRLLAGSLGTLGLILEVSLKVLPRPIASST
Sbjct: 121 FVLGAVLMDAQGEPLHFGGQVMKNVAGYDISRLLAGSLGTLGLILEVSLKVLPRPIASST 180

Query: 181 RVFEINQEGALRLLNQSAGQPLPLVASAWVGNVLTIRLSGAQAAVDSAIAKLGGTELSNP 240
           RVFEINQEGALRLLNQSAGQPLPLVASAWVGNVLTIRLSGAQAAVDSAIAKLGGTELSNP
Sbjct: 181 RVFEINQEGALRLLNQSAGQPLPLVASAWVGNVLTIRLSGAQAAVDSAIAKLGGTELSNP 240

Query: 241 DDYWTDLREQTHPFFADAEAPLWRLSLPSVAAPIELPGRQLIEWGGAQRWLRPEGNVDAV 300
           DDYWTDLREQTHPFFADAEAPLWRLSLPSVAAPI+LPGRQLIEWGGAQRWLRPEGNVDAV
Sbjct: 241 DDYWTDLREQTHPFFADAEAPLWRLSLPSVAAPIDLPGRQLIEWGGAQRWLRPEGNVDAV 300

Query: 301 TIRAAALAVGGHASLHRGGDKAIGVFHPLQPAVETLHRRLKQQFDPQGIFNPGRLYASL 359
           TIRAAALAVGGHASLHRGGDKAIGVFHPLQPAVETLHRRLKQQFDPQGIFNPGRLYASL
Sbjct: 301 TIRAAALAVGGHASLHRGGDKAIGVFHPLQPAVETLHRRLKQQFDPQGIFNPGRLYASL 359


>gi|300313123|ref|YP_003777215.1| D-lactate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 471

 Score = 65.5 bits (158), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 143/382 (37%), Gaps = 81/382 (21%)

Query: 43  GELLDTRAYSGIIDYEPTELVITARCGTPLSEIDAALAQHNQMLAWEPPRFGGAVTVGGM 102
           G  +D    + ++     +L  T + G    +++  +         +P   G   ++GGM
Sbjct: 97  GVTVDLSQMNQVLAVHAEDLTATVQAGVTRKQLNQEIKDTGLFFPIDP---GADASLGGM 153

Query: 103 VAAGLSGPARASAGAVRDFVLGAVLMDAQGEPLHFGGQVMKNVAGYDISRLLAGSLGTLG 162
            +   SG      G +++  L   ++ AQGE +  G +  K+ AGYD++R+  GS GTLG
Sbjct: 154 ASTRASGTNAVRYGTMKENTLTLTVVTAQGEIIKTGTRAKKSSAGYDLTRVYVGSEGTLG 213

Query: 163 LILEVSLKVLPRPIASSTRV-------------------------FEINQEGALRLLNQS 197
           +I EV++++ P+P A S  +                          E+  E  +R +N  
Sbjct: 214 IITEVTVRLYPQPEAISAAICSFPTVADAVNTVIQTIQMGVPLARVELLDENGVRAINAH 273

Query: 198 AGQPLPLVASAWVGNVLTIRLSGA------QAAVDSAIAK----LGGTELSNPDD---YW 244
               LP      V  +L     G+      QA +   IAK    LG    + P+D    W
Sbjct: 274 DKLSLP------VNPLLLFEFHGSENGVKEQAELVQDIAKEFHALGFEWATRPEDRTRLW 327

Query: 245 T----------DLREQTHPFFADAEAPLWRLSLPSVAAPIELPGRQLIEW---------G 285
           T           LR        D   P+ RL+   +A   +   + L             
Sbjct: 328 TARHNAYFALLQLRPGARAISTDCCVPISRLAECVLATKADCEEQGLTHAIIGHVGDGNF 387

Query: 286 GAQRWLRPEGNVD-----AVTIRAAALAVGGHASLHRGGDKAIGVFHPLQPAVE------ 334
             Q  + P    D      V  R  A A+G   +    G+  +G  H +   ++      
Sbjct: 388 HVQMMVDPNDPADIARAEGVNQRMVARAIGMDGTC--TGEHGVG-LHKMDFLIQEHGEGA 444

Query: 335 -TLHRRLKQQFDPQGIFNPGRL 355
             + R +K   DP+ I NPG++
Sbjct: 445 IAVMRAIKHALDPKNIMNPGKI 466


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,263,026
Number of extensions: 58261
Number of successful extensions: 216
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 3
Length of query: 359
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,212,660
Effective search space: 331056180
Effective search space used: 331056180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)