BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0248.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311047|ref|YP_003775139.1| arginase/agmatinase/formimionog...   617   e-178
gi|300309408|ref|YP_003773500.1| arginase/agmatinase/formimionog...    74   2e-14

>gi|300311047|ref|YP_003775139.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  617 bits (1591), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 303/304 (99%), Positives = 304/304 (100%)

Query: 1   MPRFGGIATMMRLPHVEDPAGLDVGFVGVPLDIGTSNRSGTRFGPRQIRTESVLLRPYNM 60
           MPRFGGIATMMRLPHVEDPAGLDVGFVGVPLDIGTSNRSGTRFGPRQIRTESVLLRPYNM
Sbjct: 14  MPRFGGIATMMRLPHVEDPAGLDVGFVGVPLDIGTSNRSGTRFGPRQIRTESVLLRPYNM 73

Query: 61  ATRAAPFDSLKVADLGDVALNPYSLLDSVRMIEEAYDRIYATGCKTISLGGDHTLTLPIL 120
           ATRAAPFDSLKVADLGDVALNPYSLLDSVRMIEEAYDRIYATGCKTISLGGDHTLTLPIL
Sbjct: 74  ATRAAPFDSLKVADLGDVALNPYSLLDSVRMIEEAYDRIYATGCKTISLGGDHTLTLPIL 133

Query: 121 RALARHRGPVGLIHVDAHADVNDTMNGEKIAHGTPFRRAFEEGLLDPQRVVQIGLRGTGY 180
           RALAR+RGPVGLIHVDAHADVNDTMNGEKIAHGTPFRRAFEEGLLDPQRVVQIGLRGTGY
Sbjct: 134 RALARYRGPVGLIHVDAHADVNDTMNGEKIAHGTPFRRAFEEGLLDPQRVVQIGLRGTGY 193

Query: 181 HADDFDWCRAQGFRVVQAEECWHRSLAPLMEEVRAQMGDGPVYLTFDIDGLDPAFAPGTG 240
           HADDFDWCRAQGFRVVQAEECWHRSLAPLMEEVRAQMGDGPVYLTFDIDGLDPAFAPGTG
Sbjct: 194 HADDFDWCRAQGFRVVQAEECWHRSLAPLMEEVRAQMGDGPVYLTFDIDGLDPAFAPGTG 253

Query: 241 TPEIGGLTVQQGLEIIRGCKGLDIVSADVVEVSPPYDQAGTTALVAANLAYEMLCILPGV 300
           TPEIGGLTVQQGLEIIRGCKGLDIVSADVVEVSPPYDQAGTTALVAANLAYEMLCILPGV
Sbjct: 254 TPEIGGLTVQQGLEIIRGCKGLDIVSADVVEVSPPYDQAGTTALVAANLAYEMLCILPGV 313

Query: 301 TYRT 304
           TYRT
Sbjct: 314 TYRT 317


>gi|300309408|ref|YP_003773500.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 126/305 (41%), Gaps = 51/305 (16%)

Query: 26  FVGVPLDIGTSNRSGTRFGPRQIRTESVLLRPYNMATRAAPFDSLKVADLGDVA--LNPY 83
            +G P D+G S R G    P  +R   +         R      L V D GD+A   NP 
Sbjct: 6   MMGAPTDVGASRR-GASMAPAALRVAEL--------QRGLQQHGLDVIDGGDLAGPANPQ 56

Query: 84  S-----------LLDSVRMIEEAYDRIYATGCKTISLGGDHTLTLPILRALARHRGPVG- 131
                       ++   + + EA  +  A G   + +GGDH L +  + A+A H    G 
Sbjct: 57  QPPVQGLRHLEQVVQWNQTVHEAVAQCLADGELPLLMGGDHALAVGSIAAVAAHCRSQGK 116

Query: 132 ---LIHVDAHADVNDTMNGEK-IAHGTPFRRAFEEG------------LLDPQRVVQIGL 175
              ++ +DAHAD N + +      HG P       G             L PQ++ Q+G+
Sbjct: 117 ELRVLWLDAHADANTSQSTPTGNIHGMPVACLLGVGPAALTAIGGQTPALQPQQICQVGI 176

Query: 176 RGTGYHADDFDWCRAQGFRVVQAEECWHRSLAPLMEEVRAQMGDGP---VYLTFDIDGLD 232
           R      ++    R  G RV          +   MEE  A  G GP   ++++FD+D LD
Sbjct: 177 RSVDR--EEKRHLRELGVRVFDMRHIDEYGMRQTMEEALA--GVGPQTHLHVSFDVDFLD 232

Query: 233 PAFAPGTGTPEIGGLTVQQG---LEIIRGCKGLDIVSADVVEVSPPYDQAGTTALVAANL 289
            A APG GT   GG T ++    +E+I     L   S DV+E++P  D    TA +  +L
Sbjct: 233 AALAPGVGTAVPGGPTYREAQLCMEMIADTGAL--ASLDVMELNPACDVRNQTAELVVDL 290

Query: 290 AYEML 294
              + 
Sbjct: 291 VESLF 295


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.141    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,062,246
Number of extensions: 48752
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)