BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0242.p
         (237 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311042|ref|YP_003775134.1| proline/glycine betaine ABC tra...   396   e-111
gi|300311044|ref|YP_003775136.1| proline/glycine betaine ABC tra...   101   5e-23

>gi|300311042|ref|YP_003775134.1| proline/glycine betaine ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score =  396 bits (1017), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/237 (95%), Positives = 226/237 (95%)

Query: 1   MTRVRHVFASALGFALVLAGLVWWIGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGI 60
           MTRVRHVFA ALGFALVLAGLVWWIGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGI
Sbjct: 1   MTRVRHVFAGALGFALVLAGLVWWIGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGI 60

Query: 61  PAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLARARARARARARATILALWLASLLPI 120
           PAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLA A A        TILALWLASLLPI
Sbjct: 61  PAGIALSRPGAQRSAEKFIQIFNIGNTIPSIAVLALALAFFGIGNGPTILALWLASLLPI 120

Query: 121 VRNTYEGLKNVPAAMKEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLS 180
           VRNTYEGLKNVPAAMKEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLS
Sbjct: 121 VRNTYEGLKNVPAAMKEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLS 180

Query: 181 MLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTALSGFYLARRGLRT 237
           MLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTALSGFYLARRGLRT
Sbjct: 181 MLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLALVLDALVTALSGFYLARRGLRT 237


>gi|300311044|ref|YP_003775136.1| proline/glycine betaine ABC
           transporters permease [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  101 bits (252), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 121/207 (58%), Gaps = 10/207 (4%)

Query: 28  DVIQKYRGD---LIYYTGKHLELVFTSMLLALATGIPAGIALSRPGAQRSAEKFIQIFNI 84
           ++ Q  + D   ++  T +HL+LV  ++ LA+A G+P GI + R   +  A   + +  I
Sbjct: 2   NIFQYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVR--VRWLAGPLMGLATI 59

Query: 85  GNTIPSIAVLAR-----ARARARARARATILALWLASLLPIVRNTYEGLKNVPAAMKEAA 139
             T+PSIA+        ++  A       I A++L SLLPI+RNTY  L+N+ A +KEA 
Sbjct: 60  VLTLPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAG 119

Query: 140 RGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLN 199
            GIGM   Q L  V+LP A+P+I+GGVRTA+ +N+G   ++ +IG   LG LI   I  +
Sbjct: 120 IGIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQS 179

Query: 200 NHGQLLLGAAATALLALVLDALVTALS 226
           N  +L++GA   ++LA++ D L+  L 
Sbjct: 180 NMQKLVVGAVMISVLAIIADTLLQRLQ 206


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.141    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 589,411
Number of extensions: 21169
Number of successful extensions: 209
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 5
Length of query: 237
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 155
Effective length of database: 1,231,600
Effective search space: 190898000
Effective search space used: 190898000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)