BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0236.p (522 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311037|ref|YP_003775129.1| methyl-accepting chemotaxis tra... 1026 0.0 gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra... 575 e-165 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 573 e-164 gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I p... 523 e-149 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 381 e-107 >gi|300311037|ref|YP_003775129.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 1026 bits (2654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/522 (99%), Positives = 521/522 (99%) Query: 1 MKVLSEMKIGVKLSLGFASQLLLLLALVAAAMLGINSLRETIVYANKLKNEQLEPLYLAR 60 MKVLSEMKIGVKLSLGFASQLLLLLALVAAAMLGINSLRETIVYANKLKNEQLEPLYLAR Sbjct: 1 MKVLSEMKIGVKLSLGFASQLLLLLALVAAAMLGINSLRETIVYANKLKNEQLEPLYLAR 60 Query: 61 EALDQTGIAARNAYVFVSDADAKNELNIVDEQKAIYLRQLQLLEPRLADRAGFAAVREGL 120 EALDQTGIAARNAYVFVSDADAKNELNIVDEQKAIYL+QLQLLEPRLADRAGFAAVREGL Sbjct: 61 EALDQTGIAARNAYVFVSDADAKNELNIVDEQKAIYLQQLQLLEPRLADRAGFAAVREGL 120 Query: 121 LQMAEELKRPRRYRDSGALEAYRDFLVNECSPLRRKIVANINQLIDQISAESTTAGDTAE 180 LQMAEELKRPRRYRDSGA+EAYRDFLVNECSPLRRKIVANINQLIDQISAESTTAGDTAE Sbjct: 121 LQMAEELKRPRRYRDSGAMEAYRDFLVNECSPLRRKIVANINQLIDQISAESTTAGDTAE 180 Query: 181 NAAKQALLLISLLAGLALLIAVVIAFFITRSLLRQLGGEPAYAMGIAQRIAHGDLAVDVV 240 NAAKQALL ISLLAGLALLIAVVIAFFITRSLLRQLGGEPAYAMGIAQRIAHGDLAVDVV Sbjct: 181 NAAKQALLFISLLAGLALLIAVVIAFFITRSLLRQLGGEPAYAMGIAQRIAHGDLAVDVV 240 Query: 241 TRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSIERACSEISSGNADLSGRTERQASSLE 300 TRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSIERACSEISSGNADLSGRTERQASSLE Sbjct: 241 TRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSIERACSEISSGNADLSGRTERQASSLE 300 Query: 301 ETASAMEQITSAVRQSADNAIQANQLAGSASSIALKGGQMMGDVVATMEDIHHSSVKIVD 360 ETASAMEQITSAVRQSADNAIQANQLAGSASSIALKGGQMMGDVVATMEDIHHSSVKIVD Sbjct: 301 ETASAMEQITSAVRQSADNAIQANQLAGSASSIALKGGQMMGDVVATMEDIHHSSVKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISA 420 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISA Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISA 420 Query: 421 SVAKVESGSGLVKGAGETMGELVGSVQNVSKVIAEITASSREQSTGIEQVNDAISHMDEV 480 SVAKVESGSGLVKGAGETMGELVGSVQNVSKVIAEITASSREQSTGIEQVNDAISHMDEV Sbjct: 421 SVAKVESGSGLVKGAGETMGELVGSVQNVSKVIAEITASSREQSTGIEQVNDAISHMDEV 480 Query: 481 TQQNSALVEQSAAAAEALTAQAQSLARLVSTFKVAPDALALR 522 TQQNSALVEQSAAAAEALTAQAQSLARLVSTFKVAPDALALR Sbjct: 481 TQQNSALVEQSAAAAEALTAQAQSLARLVSTFKVAPDALALR 522 >gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 575 bits (1481), Expect = e-165, Method: Compositional matrix adjust. Identities = 320/515 (62%), Positives = 401/515 (77%) Query: 1 MKVLSEMKIGVKLSLGFASQLLLLLALVAAAMLGINSLRETIVYANKLKNEQLEPLYLAR 60 M MKIG KLSLGFA L L + L ++ IN L +I A+ ++ E+L PLYLAR Sbjct: 9 MSGFKNMKIGTKLSLGFALLLTLTIILAGISLFSINRLTGSIKAADDVQVERLLPLYLAR 68 Query: 61 EALDQTGIAARNAYVFVSDADAKNELNIVDEQKAIYLRQLQLLEPRLADRAGFAAVREGL 120 EALDQTG+AARNAYVF ++ADA+ EL IVDEQK IYL+ L+ +EP GF VR GL Sbjct: 69 EALDQTGLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFVGHKGFDKVRTGL 128 Query: 121 LQMAEELKRPRRYRDSGALEAYRDFLVNECSPLRRKIVANINQLIDQISAESTTAGDTAE 180 LQMAEELKRPR YR+SG +E +RDFLVNECSPLRR+IV +IN++I++ A++ A T Sbjct: 129 LQMAEELKRPRIYRESGKMEEFRDFLVNECSPLRRQIVLDINKVIEEADADNIKAHQTTV 188 Query: 181 NAAKQALLLISLLAGLALLIAVVIAFFITRSLLRQLGGEPAYAMGIAQRIAHGDLAVDVV 240 + A A L+++L G+ +I+ ++AF ITRSLL+QLGGEPAYA IAQ+IA GDL DV Sbjct: 189 DMAAMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLTADVD 248 Query: 241 TRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSIERACSEISSGNADLSGRTERQASSLE 300 + D +SLL+AIK MRD+L+ IV +VR+GT +IE+A +EI++GN DLS RTE+QA +LE Sbjct: 249 AKPGDTTSLLFAIKKMRDNLAAIVGKVREGTHAIEQASAEIATGNMDLSSRTEQQAGALE 308 Query: 301 ETASAMEQITSAVRQSADNAIQANQLAGSASSIALKGGQMMGDVVATMEDIHHSSVKIVD 360 ETASAME++ S V+Q+ADNA QA+QLA SAS +A +GGQ++G VV+TME I+ SS KIVD Sbjct: 309 ETASAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIVD 368 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISA 420 IISVIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVR+LAQRSA AAKEI +LI+ Sbjct: 369 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLIND 428 Query: 421 SVAKVESGSGLVKGAGETMGELVGSVQNVSKVIAEITASSREQSTGIEQVNDAISHMDEV 480 SV ++E GS LV AG TM +V SV+ V+ V+AEI+ +S+EQS GI QVN AI+HMDE Sbjct: 429 SVGQIEQGSSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEA 488 Query: 481 TQQNSALVEQSAAAAEALTAQAQSLARLVSTFKVA 515 TQQNSALVE++AAAA ++ QA+ LA LVSTFK+A Sbjct: 489 TQQNSALVEEAAAAANSMKTQAEQLAGLVSTFKLA 523 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 573 bits (1476), Expect = e-164, Method: Compositional matrix adjust. Identities = 310/512 (60%), Positives = 399/512 (77%) Query: 3 VLSEMKIGVKLSLGFASQLLLLLALVAAAMLGINSLRETIVYANKLKNEQLEPLYLAREA 62 + MKIG KL+LGF + ++L + + ++ I +L +I +++++L PLY AREA Sbjct: 1 MFKHMKIGTKLALGFGALVVLTILVSGISLSSIRALTSSIKAVLAVQDQKLAPLYAAREA 60 Query: 63 LDQTGIAARNAYVFVSDADAKNELNIVDEQKAIYLRQLQLLEPRLADRAGFAAVREGLLQ 122 LDQTGIAARNAYVF SDADA+ EL IVDEQK +YL+ ++ L P A F VR G+LQ Sbjct: 61 LDQTGIAARNAYVFRSDADAQKELAIVDEQKQLYLKAIKDLGPLFAGNKEFEKVRSGMLQ 120 Query: 123 MAEELKRPRRYRDSGALEAYRDFLVNECSPLRRKIVANINQLIDQISAESTTAGDTAENA 182 MAEELKRPR YR+SG E YRDFLVNECSPLRR+IV++I ++ Q+ AE+ A D + Sbjct: 121 MAEELKRPRLYRESGRSEEYRDFLVNECSPLRRQIVSDIGTVLAQVEAENNRAQDATDKM 180 Query: 183 AKQALLLISLLAGLALLIAVVIAFFITRSLLRQLGGEPAYAMGIAQRIAHGDLAVDVVTR 242 A+ A L +++L + ++I+++IA +TR LL+QLGGEP YA IAQ+IA GDL +V T+ Sbjct: 181 AQLAALTVAVLTLVVVVISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTK 240 Query: 243 SHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSIERACSEISSGNADLSGRTERQASSLEET 302 + D SSLL+AIK MRDSL IVAQVRQGT +IE+A SEI+SGN DLS RTE+QASSLEET Sbjct: 241 TGDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEET 300 Query: 303 ASAMEQITSAVRQSADNAIQANQLAGSASSIALKGGQMMGDVVATMEDIHHSSVKIVDII 362 ASAME++ + V+Q+ADNA QA+QLA SAS +A +GG+++ VV TM+ I+ SS KIVDII Sbjct: 301 ASAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDII 360 Query: 363 SVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISASV 422 SVIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVR+LAQRSA AAKEI ELI+ SV Sbjct: 361 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSV 420 Query: 423 AKVESGSGLVKGAGETMGELVGSVQNVSKVIAEITASSREQSTGIEQVNDAISHMDEVTQ 482 +++E GS LV+ AG+TM +V SV+ V+ V+AEI+ +S+EQS GI QVN AI+HMDE TQ Sbjct: 421 SQIERGSSLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQ 480 Query: 483 QNSALVEQSAAAAEALTAQAQSLARLVSTFKV 514 QNSALVE++AAAA ++ QA +L+ LV+TF++ Sbjct: 481 QNSALVEEAAAAANSMKEQAGALSGLVATFRL 512 >gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 523 bits (1348), Expect = e-149, Method: Compositional matrix adjust. Identities = 287/516 (55%), Positives = 383/516 (74%) Query: 1 MKVLSEMKIGVKLSLGFASQLLLLLALVAAAMLGINSLRETIVYANKLKNEQLEPLYLAR 60 M LS++KIG +L LGF ++L+L L+ A++ +N++ + Y + + +LEPLY+AR Sbjct: 1 MNQLSKLKIGTQLRLGFGIVIVLMLILITFALMRMNAISAAVQYQETVTDTKLEPLYVAR 60 Query: 61 EALDQTGIAARNAYVFVSDADAKNELNIVDEQKAIYLRQLQLLEPRLADRAGFAAVREGL 120 EALDQTG+AARNAY+F A+A EL ++D+QKA+YL L+ LEP LA +A F + GL Sbjct: 61 EALDQTGLAARNAYIFHDQAEALKELALLDQQKALYLDALRQLEPVLAGQAQFEKAKAGL 120 Query: 121 LQMAEELKRPRRYRDSGALEAYRDFLVNECSPLRRKIVANINQLIDQISAESTTAGDTAE 180 L MAEELKRPR+YR+SG +EAY +FLV ECSPLRR+IV +I+ L+ + E+ AGD A+ Sbjct: 121 LAMAEELKRPRKYRESGQMEAYGEFLVKECSPLRRQIVQDIDALLKVVQRETKAAGDRAD 180 Query: 181 NAAKQALLLISLLAGLALLIAVVIAFFITRSLLRQLGGEPAYAMGIAQRIAHGDLAVDVV 240 +L LI A + L +++ A+ I +SLL QLGGEP YA+ I RIAHG+L+ V Sbjct: 181 ALFASSLRLIMACAAIILGVSIATAWLIRKSLLGQLGGEPRYAVEITGRIAHGELSAPVD 240 Query: 241 TRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSIERACSEISSGNADLSGRTERQASSLE 300 T D+SSLLY I++MRD L+ +V QVR GT +I A SEI+ GN +LS RTE+QA +LE Sbjct: 241 TAPGDRSSLLYEIRVMRDKLASLVQQVRVGTHAIADASSEIAVGNQNLSERTEQQADTLE 300 Query: 301 ETASAMEQITSAVRQSADNAIQANQLAGSASSIALKGGQMMGDVVATMEDIHHSSVKIVD 360 +T +AM+++T AVR++ADNA QA LAGSAS +A + G ++ VV TM I SS KIVD Sbjct: 301 KTVAAMDELTQAVRRNADNAQQAKHLAGSASDVASQAGTVVQQVVDTMGQIDASSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISA 420 II VIDGIAFQTNILALNAAVEAARAGE GRGFAVVA+EVR+LAQRSA+AA+EIK LI + Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSASAAREIKSLIDS 420 Query: 421 SVAKVESGSGLVKGAGETMGELVGSVQNVSKVIAEITASSREQSTGIEQVNDAISHMDEV 480 SV+ V GS LV+ AG TM ++V SVQ VS V+ EI+A+S+ QS GI +VN AI+ +DE Sbjct: 421 SVSSVTDGSRLVEQAGATMQDVVESVQRVSAVVVEISAASQAQSDGILEVNTAIARLDEN 480 Query: 481 TQQNSALVEQSAAAAEALTAQAQSLARLVSTFKVAP 516 TQQN+ALVE++AAA+++++ QA L +LV FK++P Sbjct: 481 TQQNAALVEEAAAASQSMSQQADHLNQLVGAFKLSP 516 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 381 bits (978), Expect = e-107, Method: Compositional matrix adjust. Identities = 250/535 (46%), Positives = 350/535 (65%), Gaps = 42/535 (7%) Query: 5 SEMKIGVKLSLGFASQLLLLLALVAAAMLGINSLRETIVYANKLKNEQLEPLYLAREALD 64 S MK+G +L LGFA +LLL+ + + ++ ++ + ++KN + L +E L+ Sbjct: 3 SGMKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPES---ALVKEMLE 59 Query: 65 QTG---IAARNAYVFVSDADAKNELNIVDEQKAIYLRQLQLLE----------------- 104 G I+ RN + + D E ++ Q Y Q L+ Sbjct: 60 TVGERSISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAAL 119 Query: 105 PRLADRAGFAAVREGLLQMAEELKRPRRYRDSGALEAYR--DFLVNECSPLRRKIVANIN 162 P++A +A A E L+ A E + R EAY FL + P+++ + Sbjct: 120 PKIAAQASKA---EKLINEAVEFGKRR--------EAYELAQFLKEQYLPVQKSWQVELK 168 Query: 163 QLI---DQISAESTTAGDTAENAAKQALLLISLLAGLALLIAVVIAFFITRSLLRQLGGE 219 L DQ++ E+ A A + A+ +LLIS + ++ AV+ AF++TR LLR+LGGE Sbjct: 169 ALAALEDQLNKEAAEASAVAYSRARMLMLLIS---AIGVVTAVLAAFWLTRHLLRKLGGE 225 Query: 220 PAYAMGIAQRIAHGDLAVDVVTRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSIERACS 279 P YA+ IA +IA GDLAV + TR+ D SL+ A+++MRD L+ IVA+VR+G+++I A S Sbjct: 226 PDYAVQIAGQIAEGDLAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASS 285 Query: 280 EISSGNADLSGRTERQASSLEETASAMEQITSAVRQSADNAIQANQLAGSASSIALKGGQ 339 EI+ GN DLSGRTE+QA +LEETAS+MEQ+ S V+Q+A+NA QAN LA +AS +A++GG Sbjct: 286 EIARGNLDLSGRTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGS 345 Query: 340 MMGDVVATMEDIHHSSVKIVDIISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASE 399 ++ VV TM+ I+ SS K+ DI+SVIDGIAFQTNILALNAAVEAARAGE GRGFAVVASE Sbjct: 346 IVSQVVQTMQSINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 405 Query: 400 VRTLAQRSAAAAKEIKELISASVAKVESGSGLVKGAGETMGELVGSVQNVSKVIAEITAS 459 VR+LAQRSA+AAKEIK LI SV KVE+GS LV+ AG TM ++V S++ V+ V+ EI + Sbjct: 406 VRSLAQRSASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHA 465 Query: 460 SREQSTGIEQVNDAISHMDEVTQQNSALVEQSAAAAEALTAQAQSLARLVSTFKV 514 +REQS+GIEQVN+AI +D++TQQN+ALVEQ+AAAA +L QA L +LVS F++ Sbjct: 466 NREQSSGIEQVNEAIIQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRL 520 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.128 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,046,719 Number of extensions: 34420 Number of successful extensions: 510 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 289 Number of HSP's successfully gapped: 71 Length of query: 522 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 432 Effective length of database: 1,193,720 Effective search space: 515687040 Effective search space used: 515687040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)