BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0234.p (365 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311035|ref|YP_003775127.1| methyl-accepting chemotaxis pro... 715 0.0 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 85 9e-18 gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I p... 80 3e-16 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 77 2e-15 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 76 3e-15 >gi|300311035|ref|YP_003775127.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 393 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/365 (99%), Positives = 363/365 (99%) Query: 1 MALALLVLLLHFAVDSESGIVALLVAASVVVGSNLGLYWWLRRLSAGKDAAFGKVVDQHL 60 MALALLVLLLHFAVDSESGIVALLVAASVVVGSNLGLYWWLRRLSAGKD AFGKVVDQHL Sbjct: 29 MALALLVLLLHFAVDSESGIVALLVAASVVVGSNLGLYWWLRRLSAGKDVAFGKVVDQHL 88 Query: 61 VLEQEMGARLAEAVGDTEFAAIALVKQVREIHEAAAALVRYLDQSSLQSAALEREIDGGM 120 VLEQEMGARLAEAVGDTEFAAIALVKQVREIHEAAAALVRYLDQSSLQSAALEREIDGGM Sbjct: 89 VLEQEMGARLAEAVGDTEFAAIALVKQVREIHEAAAALVRYLDQSSLQSAALEREIDGGM 148 Query: 121 EKISSISTFIRELPDRIRQDMDAIHEASREIQELGKLVSMIKQIGRQTELLALNAAIEAA 180 EKISSISTFIRELPDRIRQDMDAIHEASREIQELGKLVSMIKQIGRQTELLALNAAIEAA Sbjct: 149 EKISSISTFIRELPDRIRQDMDAIHEASREIQELGKLVSMIKQIGRQTELLALNAAIEAA 208 Query: 181 RAGDAGRGFAVVAAEVRNLAISATQAANVIDEGLKKAQQKVDTGLQFRFLDESAQQLSEA 240 RAGDAGRGFAVVAAEVRNLAISATQAANVIDEGLKKAQQKVDTGLQFRFLDESAQQLSEA Sbjct: 209 RAGDAGRGFAVVAAEVRNLAISATQAANVIDEGLKKAQQKVDTGLQFRFLDESAQQLSEA 268 Query: 241 AMLAESTQLLRQRYEEVRQFYKSAFSVVSSHDAQLASDLGEILGEIQFQDIVRQRIERLR 300 AMLAESTQLLRQRYEEVRQFYKSAFSVVSSHDAQLASDLGEILGEIQFQDIVRQRIERLR Sbjct: 269 AMLAESTQLLRQRYEEVRQFYKSAFSVVSSHDAQLASDLGEILGEIQFQDIVRQRIERLR 328 Query: 301 EAGEQRDTLFREMAQGRDAPDMGALAVAEKLRQVIQDYLVKESGHSRMTPQEGEGGSDLP 360 EAGEQRDTLFREMAQ RDAPDMGALAVAEKLRQVIQDYLVKESGHSRMTPQEGEGGSDLP Sbjct: 329 EAGEQRDTLFREMAQERDAPDMGALAVAEKLRQVIQDYLVKESGHSRMTPQEGEGGSDLP 388 Query: 361 KFEFF 365 KFEFF Sbjct: 389 KFEFF 393 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 84.7 bits (208), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 52/257 (20%) Query: 24 LVAASVVVGSNLGLYWWLRRLSA---------GKDAAFGKVVDQHLVLEQEMGARLAEAV 74 LV VV+ + L WW+ RL A + A G + ++ +L EA+ Sbjct: 196 LVTTCVVLA--MALSWWIARLVARPLANAVDIARQVAAGDLTADIPTAHRDETGQLLEAL 253 Query: 75 GDTEFAAIALVKQVRE----IHEAAAALVR-YLDQSSL---QSAALEREIDGGMEKISSI 126 + +V++VR+ I A+A + +D SS Q+ ALE E ME+++S Sbjct: 254 RQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE-ETASAMEELTST 312 Query: 127 STFIRELPDRIRQ------------------------DMDAIHEASREIQELGKLVSMIK 162 +R+ D RQ M AI+++SR+I ++ + +I Sbjct: 313 ---VRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVDI---IGVID 366 Query: 163 QIGRQTELLALNAAIEAARAGDAGRGFAVVAAEVRNLAISATQAANVIDEGLKKAQQKVD 222 I QT +LALNAA+EAARAG+ GRGFAVVA+EVR LA + AA+ I + + KVD Sbjct: 367 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDDSVAKVD 426 Query: 223 TGLQFRFLDESAQQLSE 239 TG + +DE+ Q ++E Sbjct: 427 TG--SKLVDEAGQTMNE 441 >gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 668 Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/125 (43%), Positives = 75/125 (60%), Gaps = 13/125 (10%) Query: 132 ELPDRIRQDMDAIHEASREIQELGKLVSMIKQIGRQTELLALNAAIEAARAGDAGRGFAV 191 E+ + Q MD I +SR I ++ +S+I I QT +LALNAA+EAARAG+ GRGFAV Sbjct: 467 EVVSNVVQTMDEIKTSSRRIVDI---ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 523 Query: 192 VAAEVRNLAISATQAANVIDEGLKKAQQKVDTGLQFRFLDESAQQLSE--------AAML 243 VA+EVR+LA + AA I E + + KVD G R +DE+ + E A ++ Sbjct: 524 VASEVRSLAQRSASAAKEIKELISDSVDKVDAG--GRLVDEAGMTMGEIVNSVRQVAGIM 581 Query: 244 AESTQ 248 +E TQ Sbjct: 582 SEITQ 586 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/87 (51%), Positives = 62/87 (71%), Gaps = 3/87 (3%) Query: 141 MDAIHEASREIQELGKLVSMIKQIGRQTELLALNAAIEAARAGDAGRGFAVVAAEVRNLA 200 M +I+E+SR+I ++ +S+I I QT +LALNAA+EAARAG+ GRGFAVVA+EVR+LA Sbjct: 427 MSSINESSRKIVDI---ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 483 Query: 201 ISATQAANVIDEGLKKAQQKVDTGLQF 227 + AA I + + QKV+TG Q Sbjct: 484 QRSATAAKEIKGLIDDSVQKVETGSQL 510 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 76.3 bits (186), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/139 (40%), Positives = 83/139 (59%), Gaps = 4/139 (2%) Query: 86 KQVREIHEAAAALVRYLDQSSLQSAALEREIDGGMEKISSISTFIRELPDRIRQDMDAIH 145 +Q + E A+A+ L + Q+A R+ + S I++ E+ ++ Q M+ I Sbjct: 294 QQAGSLEETASAM-EELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGIT 352 Query: 146 EASREIQELGKLVSMIKQIGRQTELLALNAAIEAARAGDAGRGFAVVAAEVRNLAISATQ 205 E+SR I ++ +S+I I QT +LALNAA+EAARAG+ GRGFAVVA+EVR+LA + Sbjct: 353 ESSRRIADI---ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAG 409 Query: 206 AANVIDEGLKKAQQKVDTG 224 AA I E + + QKV G Sbjct: 410 AAKEIKELIDDSVQKVSAG 428 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 852,788 Number of extensions: 31196 Number of successful extensions: 209 Number of sequences better than 1.0e-08: 35 Number of HSP's gapped: 203 Number of HSP's successfully gapped: 35 Length of query: 365 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 279 Effective length of database: 1,212,660 Effective search space: 338332140 Effective search space used: 338332140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)