BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0233.p (126 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311034|ref|YP_003775126.1| chemotaxis response regulator p... 254 1e-69 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 101 2e-23 gi|300309955|ref|YP_003774047.1| two-component system sensor his... 100 4e-23 gi|300311032|ref|YP_003775124.1| chemotaxis CheY protein [Herbas... 87 3e-19 gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 82 1e-17 >gi|300311034|ref|YP_003775126.1| chemotaxis response regulator protein [Herbaspirillum seropedicae SmR1] Length = 126 Score = 254 bits (650), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 126/126 (100%), Positives = 126/126 (100%) Query: 1 MATSKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMP 60 MATSKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMP Sbjct: 1 MATSKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMP 60 Query: 61 NMDGLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVR 120 NMDGLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVR Sbjct: 61 NMDGLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVR 120 Query: 121 QVLPGV 126 QVLPGV Sbjct: 121 QVLPGV 126 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 101 bits (252), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 57/120 (47%), Positives = 77/120 (64%), Gaps = 1/120 (0%) Query: 4 SKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMD 63 SK+I VDDS ++ V L+ AG+ V A DGV AL+K ++ DL++TD NMP MD Sbjct: 2 SKTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKS-QTFDLVLTDQNMPRMD 60 Query: 64 GLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 GL LIR++R L + +PIL LTTE + +GK AGA GWLVKP L ++VR+V+ Sbjct: 61 GLTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120 >gi|300309955|ref|YP_003774047.1| two-component system sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 122 Score = 100 bits (248), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 78/119 (65%), Gaps = 1/119 (0%) Query: 5 KSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMDG 64 K+I +VDDS ++ ++ + L+ AG+ V+ A DG +AL + G K +L+I+D+NMP++DG Sbjct: 3 KNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLD-GRKFNLVISDLNMPHLDG 61 Query: 65 LELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 L +R ++ +P ++F P++ LTTES ++ EGK AG W+ KP LL V +++ Sbjct: 62 LSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 >gi|300311032|ref|YP_003775124.1| chemotaxis CheY protein [Herbaspirillum seropedicae SmR1] Length = 123 Score = 87.4 bits (215), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 4/117 (3%) Query: 5 KSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKP-DLLITDINMPNMD 63 K I LVDD+AT+ M R+ LE A + V+ A +G++ L+K A ++P DL I DINMP +D Sbjct: 2 KRILLVDDAATVRMYHRNILEAAHYLVEEAVNGIEGLEK--ALHQPYDLYIVDINMPKLD 59 Query: 64 GLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVR 120 G +R +R P P + ++TESQ+ R +AGA +LVKPV A LL VR Sbjct: 60 GYGFLRQLRGEP-LVHAPAIMISTESQANDRVLAYRAGANDYLVKPVTPAQLLMHVR 115 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 82.4 bits (202), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 70/110 (63%), Gaps = 2/110 (1%) Query: 7 IFLVDDSATMLMSVRSHLEMAGFA-VDTAEDGVKALKKMQAGYKPDLLITDINMPNMDGL 65 +VDD +TM VR+ L+ G+ VD AEDGV+AL+K+++ + D +++D NMPNMDGL Sbjct: 8 FLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSD-QFDFVVSDWNMPNMDGL 66 Query: 66 ELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADL 115 +++ +R P +P+L +T E++ +AGA G++VKP A L Sbjct: 67 TMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATL 116 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 376,724 Number of extensions: 13782 Number of successful extensions: 178 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 35 Length of query: 126 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 51 Effective length of database: 1,264,745 Effective search space: 64501995 Effective search space used: 64501995 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)