BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0224.p (119 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311026|ref|YP_003775118.1| chemotaxis response regulator r... 236 4e-64 gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [H... 179 4e-47 gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [H... 175 7e-46 gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 135 8e-34 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 69 8e-14 >gi|300311026|ref|YP_003775118.1| chemotaxis response regulator receiver domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 134 Score = 236 bits (601), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 118/119 (99%), Positives = 118/119 (99%) Query: 1 MRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISSVITDWNMPGMDGLGLLKKIRE 60 MRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPIS VITDWNMPGMDGLGLLKKIRE Sbjct: 16 MRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISFVITDWNMPGMDGLGLLKKIRE 75 Query: 61 TPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDKISKILQRRSSMGLQ 119 TPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDKISKILQRRSSMGLQ Sbjct: 76 TPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDKISKILQRRSSMGLQ 134 >gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 135 Score = 179 bits (455), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 85/117 (72%), Positives = 100/117 (85%) Query: 1 MRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISSVITDWNMPGMDGLGLLKKIRE 60 MRRI+ GLLKELEY K+ +ADDG+SA KILE+GALP++ V+TDWNMP MDGL LLKKIR Sbjct: 17 MRRIVSGLLKELEYTKIVEADDGSSALKILEAGALPVTFVLTDWNMPVMDGLTLLKKIRA 76 Query: 61 TPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDKISKILQRRSSMG 117 TP + LPVLM++AEAKKENIV AA++GADGYIVKPFNAATL DKI KIL RR+ + Sbjct: 77 TPSMAHLPVLMITAEAKKENIVEAAQSGADGYIVKPFNAATLKDKIEKILARRAHLA 133 >gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 133 Score = 175 bits (444), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 85/116 (73%), Positives = 97/116 (83%) Query: 1 MRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISSVITDWNMPGMDGLGLLKKIRE 60 MRRI+ GLLKELEY K+ +ADDG+SA KILESGA I+ V+TDWNMP MDGL LLKKIR Sbjct: 17 MRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDWNMPVMDGLTLLKKIRS 76 Query: 61 TPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDKISKILQRRSSM 116 TP L LPVLM++AEAKKENIV+AA+ GADGYIVKPFNA TL +KI KIL RR+ M Sbjct: 77 TPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKEKIEKILARRAHM 132 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 135 bits (341), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 66/117 (56%), Positives = 87/117 (74%), Gaps = 2/117 (1%) Query: 1 MRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISSVITDWNMPGMDGLGLLKKIRE 60 MRRI+ LLKEL Y V +A+DG A + L S V++DWNMP MDGL +L++IR+ Sbjct: 17 MRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDF--VVSDWNMPNMDGLTMLQEIRK 74 Query: 61 TPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDKISKILQRRSSMG 117 P L +LPVLMV+AEAKKENIV AA+ GA+GY+VKPF AATLD+K+ KI ++ ++ G Sbjct: 75 DPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIFEKMAAGG 131 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 69.3 bits (168), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 3/110 (2%) Query: 1 MRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISSVITDWNMPGMDGLGLLKKIRE 60 +R++++ LK Y VT+A DG A + +S + V+TD NMP MDGL L++ +RE Sbjct: 14 LRQMVVFSLKAAGY-NVTEAVDGVDALEKAKSQTFDL--VLTDQNMPRMDGLTLIRSLRE 70 Query: 61 TPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDKISKIL 110 R+P+LM++ E E GA+G++VKPF+ L + + K++ Sbjct: 71 LTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 370,564 Number of extensions: 13744 Number of successful extensions: 141 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 18 Length of query: 119 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 45 Effective length of database: 1,269,480 Effective search space: 57126600 Effective search space used: 57126600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)