BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0217.p
         (376 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311020|ref|YP_003775112.1| selenocysteine synthase [seryl-...   732   0.0  

>gi|300311020|ref|YP_003775112.1| selenocysteine synthase
           [seryl-tRNASer selenium transferase] protein
           [Herbaspirillum seropedicae SmR1]
          Length = 392

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/376 (97%), Positives = 370/376 (98%)

Query: 1   LFGETSIGVFGGHAGDFSLSQGDTRTWCEEWLGPSRMERQFQNAARLHLGGDDQARAALF 60
           LFGETSIGVFGGHAGDFSLSQGDTRTWCEEWLGPSRMERQFQNAAR+HLGGDDQARAALF
Sbjct: 17  LFGETSIGVFGGHAGDFSLSQGDTRTWCEEWLGPSRMERQFQNAARIHLGGDDQARAALF 76

Query: 61  NRTSAGIITAIAALAGHGTVMSLLPPEGRSHASVRRGAALANARLHEYTAQQNWQQSIER 120
           NRTSAGIITAIAALAGHG VMSLLPPEGRSHASVRRGAALANARLHE+TAQQNWQQSIER
Sbjct: 77  NRTSAGIITAIAALAGHGIVMSLLPPEGRSHASVRRGAALANARLHEHTAQQNWQQSIER 136

Query: 121 VRPDLVVITPVTSDLDILRDDGMLNMIQIAHAVGAVVLVDDAYGARLRPALCDGVSALSL 180
           VRPDLVVITPVTSDLDILRDDGMLNMIQIAHAVGAVVLVDDAYGARLRPALCDGVSALSL
Sbjct: 137 VRPDLVVITPVTSDLDILRDDGMLNMIQIAHAVGAVVLVDDAYGARLRPALCDGVSALSL 196

Query: 181 GADLVITSCDKAGLHGPRAGLMVGDAAAITTLQAHSREWGMDARAPTMAGVLRALQAYTS 240
           GADLVITSCDKAGLHGPRAGLM GDAAAITTLQA SREWG DARAPTMAGVLRALQAYTS
Sbjct: 197 GADLVITSCDKAGLHGPRAGLMGGDAAAITTLQARSREWGTDARAPTMAGVLRALQAYTS 256

Query: 241 LQLISEAACGKRLAEAVSHELGAWVRHSPLGVMLDAEDLLRYLLMQREMDPGLSAAVPCE 300
           LQLISEAACGKRLAEAVSHELGAWVRHSPLGVMLDAEDLLRYLLMQR+MD G SAAVPCE
Sbjct: 257 LQLISEAACGKRLAEAVSHELGAWVRHSPLGVMLDAEDLLRYLLMQRDMDAGFSAAVPCE 316

Query: 301 ASAAVGMILLREFGILTAHSHGDPGGSAALHLKPTSKSLARTGGIVSVVQALRESLKAVA 360
           ASAAVGMILLREFGILTAHSHGDPGGSAALHLKPTSKSLARTGGIVSVVQALRESLKAVA
Sbjct: 317 ASAAVGMILLREFGILTAHSHGDPGGSAALHLKPTSKSLARTGGIVSVVQALRESLKAVA 376

Query: 361 AVIDQEDRLRELILGE 376
           AVIDQEDRLRELILGE
Sbjct: 377 AVIDQEDRLRELILGE 392


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,211,669
Number of extensions: 50795
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 289
Effective length of database: 1,207,925
Effective search space: 349090325
Effective search space used: 349090325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)