BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0207.p (485 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311012|ref|YP_003775104.1| methyl-accepting chemotaxis tra... 777 0.0 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 179 5e-46 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 177 2e-45 gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis tra... 176 3e-45 gi|300310620|ref|YP_003774712.1| methyl-accepting chemotaxis tra... 171 2e-43 >gi|300311012|ref|YP_003775104.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 550 Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/383 (99%), Positives = 381/383 (99%) Query: 1 MSFLQKLRVSARLALLSALFLAAMLAMVSWNIVSLRSISAQERQMYHDRIEPMQKLNTAA 60 MSFLQKLRVSARLALLSALFLAAMLAMVSWNIVSLRSISAQERQMYHDRIEPMQKLNTAA Sbjct: 1 MSFLQKLRVSARLALLSALFLAAMLAMVSWNIVSLRSISAQERQMYHDRIEPMQKLNTAA 60 Query: 61 LAMAIHFRRGYSYIYPNAGDPKSRIGTRALNQKAEAQIQEAFDYLQGAEKTAQLAPLVSA 120 LAMAIHFRRGYSYIYPNAGDPKSRIGTRALNQKAEAQIQEAFDYLQGAEKTAQLAPLVSA Sbjct: 61 LAMAIHFRRGYSYIYPNAGDPKSRIGTRALNQKAEAQIQEAFDYLQGAEKTAQLAPLVSA 120 Query: 121 LNQAWPAYKESFQRLMDKADQDDQAGALAELQKTTDPAHVKLRDVFLQVVKLYDQSVQDH 180 LNQAWPAYKESFQRLMDKADQDDQAGALAELQKTTDPAHVKLRDVFLQVVKLYDQSVQDH Sbjct: 121 LNQAWPAYKESFQRLMDKADQDDQAGALAELQKTTDPAHVKLRDVFLQVVKLYDQSVQDH 180 Query: 181 MNVSAEGVDSTAWRLVGLLALTVALGVAFSVVIQRSITRQLGGEPDYAVDIAQAIADGDL 240 MNVSAEGVDSTAWRLV LLALTVALGVAFSVVIQRSITRQLGGEPDYAVDIAQAIADGDL Sbjct: 181 MNVSAEGVDSTAWRLVALLALTVALGVAFSVVIQRSITRQLGGEPDYAVDIAQAIADGDL 240 Query: 241 ATQVRLRAGDQGSVLAAMETMRARLAHLVQEVYKSCHAIDTGASEIADGNLNLSQRTEEQ 300 ATQVRLRAGDQGSVLAAMETMRARLAHLVQEVYKSCHAIDTGASEIADGNLNLSQRTEEQ Sbjct: 241 ATQVRLRAGDQGSVLAAMETMRARLAHLVQEVYKSCHAIDTGASEIADGNLNLSQRTEEQ 300 Query: 301 ASNLEETAASMEELTSTVKHNAQTVAEAVKLAGDASQAAGHGGQAVSGVVDLMGDIASSS 360 ASNLEETAASMEELTSTVKHNAQTVAEAVKLAGDASQAAGHGGQAVSGVVDLMGDIASSS Sbjct: 301 ASNLEETAASMEELTSTVKHNAQTVAEAVKLAGDASQAAGHGGQAVSGVVDLMGDIASSS 360 Query: 361 ARIKEIIVVIDAIAFQTNILALK 383 ARIKEIIVVIDAIAFQTNILAL Sbjct: 361 ARIKEIIVVIDAIAFQTNILALN 383 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 179 bits (453), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 107/213 (50%), Positives = 138/213 (64%), Gaps = 5/213 (2%) Query: 176 SVQDHMNVSAEGVDSTAW-RLVGLLALTVALGVAFSVV----IQRSITRQLGGEPDYAVD 230 +++D +N A + A+ R L+ L A+GV +V+ + R + R+LGGEPDYAV Sbjct: 172 ALEDQLNKEAAEASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQ 231 Query: 231 IAQAIADGDLATQVRLRAGDQGSVLAAMETMRARLAHLVQEVYKSCHAIDTGASEIADGN 290 IA IA+GDLA + RAGD S++AAM MR +LA +V EV K I T +SEIA GN Sbjct: 232 IAGQIAEGDLAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGN 291 Query: 291 LNLSQRTEEQASNLEETAASMEELTSTVKHNAQTVAEAVKLAGDASQAAGHGGQAVSGVV 350 L+LS RTE+QA LEETA+SME+L STVK NA+ +A LA AS A GG VS VV Sbjct: 292 LDLSGRTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVV 351 Query: 351 DLMGDIASSSARIKEIIVVIDAIAFQTNILALK 383 M I +SS ++ +I+ VID IAFQTNILAL Sbjct: 352 QTMQSINASSQKVADIVSVIDGIAFQTNILALN 384 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 118/289 (40%), Positives = 165/289 (57%), Gaps = 26/289 (8%) Query: 100 EAFDYLQGAEKTAQLAPLVSALNQAWPAYKESFQRLMDKADQDDQAGALAELQKTTDPAH 159 E FD + A+ A PL +NQA + A QD A ++ L + P Sbjct: 114 ELFDLI--AQNAADTEPL---MNQA-----------VTLAQQDKSAELISLLTQKIRPVQ 157 Query: 160 VKLRDVFLQVVKLYDQSVQDHMNVSAEGVDSTAWRLV-----GLLALTVALGVAFSVVIQ 214 K D ++ + +D +N A T +R + L+A +V L VA + +I Sbjct: 158 AKWLDNLDELGRF-----EDELNNQASAAADTTYRSILTTTWTLVAGSVLLAVAAAFLIV 212 Query: 215 RSITRQLGGEPDYAVDIAQAIADGDLATQVRLRAGDQGSVLAAMETMRARLAHLVQEVYK 274 RS+ QLGGEP A ++A IA G+LA + L GDQ S++A++E MRA+L +V + Sbjct: 213 RSVLHQLGGEPAQAQELAAQIAQGNLAVSIPLAKGDQHSLMASLENMRAQLTRIVDGIKH 272 Query: 275 SCHAIDTGASEIADGNLNLSQRTEEQASNLEETAASMEELTSTVKHNAQTVAEAVKLAGD 334 S +I T AS+IA GNL+LS+RTEEQA++LEETA+SMEE+TSTV+ N Q + +LA Sbjct: 273 SAESISTAASQIAVGNLDLSRRTEEQAASLEETASSMEEITSTVEQNTQNAGQGHQLARS 332 Query: 335 ASQAAGHGGQAVSGVVDLMGDIASSSARIKEIIVVIDAIAFQTNILALK 383 AS A GG+ V VV M DI+ S+ +I EII ++ IAFQTNILAL Sbjct: 333 ASLHAQKGGEVVERVVGTMKDISQSAYKITEIIATVEGIAFQTNILALN 381 >gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 582 Score = 176 bits (447), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 96/194 (49%), Positives = 131/194 (67%) Query: 190 STAWRLVGLLALTVALGVAFSVVIQRSITRQLGGEPDYAVDIAQAIADGDLATQVRLRAG 249 ST ++ ALTV L + ++I RSI LGGEP A D+AQ IA GDL V L+ Sbjct: 187 STLIVMIAAGALTVLLAIGAGLLITRSIINALGGEPGAAADVAQQIAAGDLTVAVPLKPN 246 Query: 250 DQGSVLAAMETMRARLAHLVQEVYKSCHAIDTGASEIADGNLNLSQRTEEQASNLEETAA 309 D S++A++ +MR +L +V+ + S +I A+EIA GN +LSQRTEEQA++LEETA+ Sbjct: 247 DSHSLMASLGSMREQLTTIVRGIQTSGESISVAANEIATGNTDLSQRTEEQAASLEETAS 306 Query: 310 SMEELTSTVKHNAQTVAEAVKLAGDASQAAGHGGQAVSGVVDLMGDIASSSARIKEIIVV 369 SMEELTSTV+ N+ +A LA +AS A GG+ VS V+D M +I+ SS+++ +II V Sbjct: 307 SMEELTSTVRQNSDNARQANTLAENASTLAAKGGEVVSRVIDTMNEISDSSSKVSDIITV 366 Query: 370 IDAIAFQTNILALK 383 I+ IAFQTNILAL Sbjct: 367 IEGIAFQTNILALN 380 >gi|300310620|ref|YP_003774712.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 573 Score = 171 bits (432), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 101/189 (53%), Positives = 125/189 (66%), Gaps = 3/189 (1%) Query: 198 LLALT---VALGVAFSVVIQRSITRQLGGEPDYAVDIAQAIADGDLATQVRLRAGDQGSV 254 LL LT V G+A + I R++TRQLGGEP A AIA GDL+T + + QGSV Sbjct: 196 LLVLTFGGVLFGIALGLFISRNLTRQLGGEPRDVAAAADAIASGDLSTHIDISHAAQGSV 255 Query: 255 LAAMETMRARLAHLVQEVYKSCHAIDTGASEIADGNLNLSQRTEEQASNLEETAASMEEL 314 ++AM M+ L +VQ V S +I TG+ +IA GNL+LS RTE+QAS LEETA+SMEEL Sbjct: 256 VSAMHMMQGSLRKVVQTVRTSSESIATGSRQIATGNLDLSARTEQQASALEETASSMEEL 315 Query: 315 TSTVKHNAQTVAEAVKLAGDASQAAGHGGQAVSGVVDLMGDIASSSARIKEIIVVIDAIA 374 TSTVKHNA A ++A AS A GG+ V+ VVD M I SS ++ +II VID IA Sbjct: 316 TSTVKHNASNAQNAKEMAATASTVAQEGGEVVAQVVDTMSAINESSRKMADIISVIDGIA 375 Query: 375 FQTNILALK 383 FQTNILAL Sbjct: 376 FQTNILALN 384 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.128 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,185,853 Number of extensions: 42084 Number of successful extensions: 383 Number of sequences better than 1.0e-08: 64 Number of HSP's gapped: 328 Number of HSP's successfully gapped: 64 Length of query: 485 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 396 Effective length of database: 1,198,455 Effective search space: 474588180 Effective search space used: 474588180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)