BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0206.p (273 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311011|ref|YP_003775103.1| AraC family transcription regul... 548 e-157 gi|300313525|ref|YP_003777617.1| AraC family transcription regul... 148 4e-37 gi|300310311|ref|YP_003774403.1| AraC family transcription regul... 138 5e-34 gi|300310273|ref|YP_003774365.1| AraC family transcription regul... 136 2e-33 >gi|300311011|ref|YP_003775103.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 548 bits (1411), Expect = e-157, Method: Compositional matrix adjust. Identities = 272/273 (99%), Positives = 272/273 (99%) Query: 1 MITPAAHPARPAVLPIDQVDGIARPVVAAGAQYRHGAVQPWHSHRRAQLLYGLSGLMQVI 60 MITPAAHPARPAVLPIDQVDGIARPVVAAGAQYRHGAVQPWHSHRRAQLLYGLSGLMQVI Sbjct: 1 MITPAAHPARPAVLPIDQVDGIARPVVAAGAQYRHGAVQPWHSHRRAQLLYGLSGLMQVI 60 Query: 61 TADGAWVVPPQHAVWIPSGREHQSRMLQAVTTCSAFIEPEHAPRVASSCQVLEVRPLLRE 120 TADGAWVVPPQHAVWIPSGREHQSRMLQAVTTCSAFIEPEHAPRVASSCQVL VRPLLRE Sbjct: 61 TADGAWVVPPQHAVWIPSGREHQSRMLQAVTTCSAFIEPEHAPRVASSCQVLAVRPLLRE 120 Query: 121 LLIEATRMDPHYVLHSREENLIRLLLDEIGRAEEIPAHVPLPPEPRLGELCHRFLAAPSI 180 LLIEATRMDPHYVLHSREENLIRLLLDEIGRAEEIPAHVPLPPEPRLGELCHRFLAAPSI Sbjct: 121 LLIEATRMDPHYVLHSREENLIRLLLDEIGRAEEIPAHVPLPPEPRLGELCHRFLAAPSI 180 Query: 181 RSGPAQWALQLHISERTFSRRFLAQTGMGFQQWRLRACVMYAISRLALGQPVTTIAYDLG 240 RSGPAQWALQLHISERTFSRRFLAQTGMGFQQWRLRACVMYAISRLALGQPVTTIAYDLG Sbjct: 181 RSGPAQWALQLHISERTFSRRFLAQTGMGFQQWRLRACVMYAISRLALGQPVTTIAYDLG 240 Query: 241 YERPAAFSTMFRKMTGHMPSAHPAAQAAPARAD 273 YERPAAFSTMFRKMTGHMPSAHPAAQAAPARAD Sbjct: 241 YERPAAFSTMFRKMTGHMPSAHPAAQAAPARAD 273 >gi|300313525|ref|YP_003777617.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 298 Score = 148 bits (374), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 124/231 (53%), Gaps = 3/231 (1%) Query: 40 PWHSHRRAQLLYGLSGLMQVITADGAWVVPPQHAVWIPSGREHQSRMLQAVTTCSAFIEP 99 P HSHR+ QL+ L G + TA G W+VPPQ AVWIP G H +R+ C FI P Sbjct: 35 PLHSHRKGQLVVALRGAVTCETAQGMWIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAP 94 Query: 100 EHAPRVASSCQVLEVRPLLRELLIEATRMDPHYVLHSREENLIRLLLDEIGRAEE--IPA 157 + A + C L + PLL +++ Y H R L +L++E+ ++ +P Sbjct: 95 Q-AASMPEQCCTLALSPLLVQMICHLAEQRQDYAPHERTARLAAVLVEELEHSQRHALPL 153 Query: 158 HVPLPPEPRLGELCHRFLAAPSIRSGPAQWALQLHISERTFSRRFLAQTGMGFQQWRLRA 217 H+P P RL + P+ R AQW + +SER+F+R A+TGM F +WR + Sbjct: 154 HLPAPQHSRLRAIARHLAEHPADRRTVAQWGQRHAMSERSFARFVQAETGMSFGRWRRQI 213 Query: 218 CVMYAISRLALGQPVTTIAYDLGYERPAAFSTMFRKMTGHMPSAHPAAQAA 268 +M A+ RLA G V ++ DLGY+ +AF TMFRK G P+ + A + A Sbjct: 214 HLMLALQRLASGSSVQRVSQDLGYDSVSAFITMFRKTLGKPPARYMAQRQA 264 >gi|300310311|ref|YP_003774403.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 138 bits (348), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 125/245 (51%) Query: 16 IDQVDGIARPVVAAGAQYRHGAVQPWHSHRRAQLLYGLSGLMQVITADGAWVVPPQHAVW 75 +D + VVA + + HSHRR QLLY + G+MQV T G W+VPP A+W Sbjct: 14 VDTFQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALW 73 Query: 76 IPSGREHQSRMLQAVTTCSAFIEPEHAPRVASSCQVLEVRPLLRELLIEATRMDPHYVLH 135 +P EH+ ML V+ + +I + C++LEV LLREL++ Y Sbjct: 74 VPPQVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQ 133 Query: 136 SREENLIRLLLDEIGRAEEIPAHVPLPPEPRLGELCHRFLAAPSIRSGPAQWALQLHISE 195 SR ++ L+L E+ RA IP +P P + RL +C LA P + A WA S Sbjct: 134 SRAGHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLADWAGMGGASV 193 Query: 196 RTFSRRFLAQTGMGFQQWRLRACVMYAISRLALGQPVTTIAYDLGYERPAAFSTMFRKMT 255 RT R F +TG+ F+ W + + A+ RL+ G PV +A LGY +AFS MFRK Sbjct: 194 RTVIRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKAL 253 Query: 256 GHMPS 260 P+ Sbjct: 254 RTTPN 258 >gi|300310273|ref|YP_003774365.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 136 bits (342), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 122/240 (50%), Gaps = 3/240 (1%) Query: 25 PVVAAGAQYRHGAVQPWHSHRRAQLLYGLSGLMQVITADGAWVVPPQHAVWIPSGREHQS 84 PV +Y G+V P H H + L+Y SGL++V G W+VPP AVW+ SG H Sbjct: 24 PVFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSL 83 Query: 85 RMLQAVTTCSAFIEPEHAPRVASSCQVLEVRPLLRELLIEATRMDPHYVLHSREENLIRL 144 M + F+ + R+ + V+ V PLLREL+I + + R L L Sbjct: 84 AMPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGAL 143 Query: 145 LLDEIGRAEEIPAHVPLPPEPRLG---ELCHRFLAAPSIRSGPAQWALQLHISERTFSRR 201 +++E+ +P H+P P G LC L P + A+WA +L + ++TF RR Sbjct: 144 VMEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRR 203 Query: 202 FLAQTGMGFQQWRLRACVMYAISRLALGQPVTTIAYDLGYERPAAFSTMFRKMTGHMPSA 261 FL TGM F +WR + +M ++ L G P+T +A GY+ +A++T F K G PSA Sbjct: 204 FLQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSA 263 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.135 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 892,470 Number of extensions: 37731 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 4 Length of query: 273 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 189 Effective length of database: 1,222,130 Effective search space: 230982570 Effective search space used: 230982570 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)