BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0205.p
         (300 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311010|ref|YP_003775102.1| drug/metabolite transporter (DM...   525   e-150

>gi|300311010|ref|YP_003775102.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  525 bits (1353), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 290/300 (96%), Positives = 295/300 (98%)

Query: 1   VALIWGIQPVISRYGFQHGLTPQDATLVRYLTSGLLMLPYVWRRGLAKACGLGWPRALVL 60
           VALIWGIQPVISRYGFQHGLTPQDATLVRYLTSGLLMLPYVWRRGLAKACGL WPRALVL
Sbjct: 57  VALIWGIQPVISRYGFQHGLTPQDATLVRYLTSGLLMLPYVWRRGLAKACGLRWPRALVL 116

Query: 61  FLLSGPLFSLVLVGGVNYAPASHGALIHPALTPLFGMAISRFVFRRDERFSLWGTGLLVG 120
           FLLSGPLFSLVLVGGVNYAPASHGALIHPALTPLFGMAISRFVFRRDERFSLWGT LLVG
Sbjct: 117 FLLSGPLFSLVLVGGVNYAPASHGALIHPALTPLFGMAISRFVFRRDERFSLWGTVLLVG 176

Query: 121 GLLVVGLHGVMAGGSLAPEGAWRGDLLFVLSAFMWAWYLVLNKTWGLPPLDAVAMTQVLS 180
           GLLVVGLHGVMAGGSLAPEGAWRGDLLFVLSAFMWAWYLVLNKTWGLPPLDAVAMTQVLS
Sbjct: 177 GLLVVGLHGVMAGGSLAPEGAWRGDLLFVLSAFMWAWYLVLNKTWGLPPLDAVAMTQVLS 236

Query: 181 LGWVLAVLPWQGAQTFAKPWAALALQSLYHGVLVSIVSVALFNWVVARLGVKAMMLNALS 240
           LGWVLAVLPWQG +TFAKPWAALALQSLYHGVLVSIVSVALFNWVVARLGVKAMMLNALS
Sbjct: 237 LGWVLAVLPWQGPETFAKPWAALALQSLYHGVLVSIVSVALFNWVVARLGVKAMMLNALS 296

Query: 241 PLFGVLASAWALREPLPPSMLAGAAALLGALALSLRRPSGNPAAVLSARDEKSGCSGRLR 300
           PLFGVLASAWALREPLPPSMLAGAAA++  LALSLRRPSG+PAAVLSARDEKSGCSGRL+
Sbjct: 297 PLFGVLASAWALREPLPPSMLAGAAAIMAGLALSLRRPSGSPAAVLSARDEKSGCSGRLQ 356


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 898,473
Number of extensions: 34267
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 2
Length of query: 300
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,217,395
Effective search space: 261739925
Effective search space used: 261739925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)