BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0204.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311009|ref|YP_003775101.1| DNA repair system specific for ...   415   e-117

>gi|300311009|ref|YP_003775101.1| DNA repair system specific for
           alkylated DNA repair protein [Herbaspirillum seropedicae
           SmR1]
          Length = 217

 Score =  415 bits (1066), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/203 (99%), Positives = 202/203 (99%)

Query: 1   VERITEGALLLRAFVDASEATQLMQDIATVLAQSPLRHMQTPGGFRMSVAMSNCGQYGWV 60
           VERITEGALLLRAFVDASEA QLM+DIATVLAQSPLRHMQTPGGFRMSVAMSNCGQYGWV
Sbjct: 15  VERITEGALLLRAFVDASEAAQLMRDIATVLAQSPLRHMQTPGGFRMSVAMSNCGQYGWV 74

Query: 61  TDRRGYRYQSLDPLSERDWPPMPASFLALAGRAAEAAGFAAFVPDACLVNRYEPGAKMSL 120
           TDRRGYRYQSLDPLSERDWPPMPASFLALAGRAAEAAGFAAFVPDACLVNRYEPGAKMSL
Sbjct: 75  TDRRGYRYQSLDPLSERDWPPMPASFLALAGRAAEAAGFAAFVPDACLVNRYEPGAKMSL 134

Query: 121 HQDRNEIDMTQPIVSVSLGLPATFLFGGMERSDKAQRMRLDSGDVVVWGGPARLAFHGVD 180
           HQDRNEIDMTQPIVSVSLGLPATFLFGGMERSDKAQRMRLDSGDVVVWGGPARLAFHGVD
Sbjct: 135 HQDRNEIDMTQPIVSVSLGLPATFLFGGMERSDKAQRMRLDSGDVVVWGGPARLAFHGVD 194

Query: 181 TVRQAEHPLTGACRYNLTFRRAR 203
           TVRQAEHPLTGACRYNLTFRRAR
Sbjct: 195 TVRQAEHPLTGACRYNLTFRRAR 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 594,298
Number of extensions: 21626
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)