BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0202.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311007|ref|YP_003775099.1| O6-methylguanine-DNA methyltran...   306   4e-85
gi|300309400|ref|YP_003773492.1| methylated-DNA-protein-cysteine...    86   1e-18
gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine...    69   2e-13

>gi|300311007|ref|YP_003775099.1| O6-methylguanine-DNA
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 369

 Score =  306 bits (784), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   LLVAATGQGICAVTLGEDADVLVRQLQDRFPQADLAPGDADFERTLAQVLAALEDPRQGA 60
           LLVAATGQGICAVTLGEDADVLVRQLQDRFPQADLAPGDADFERTLAQVLAALEDPRQGA
Sbjct: 215 LLVAATGQGICAVTLGEDADVLVRQLQDRFPQADLAPGDADFERTLAQVLAALEDPRQGA 274

Query: 61  ALPLDVRGTAFQQRVWQALRSIPPGVTLTYSELAARLGQPAAVRAVANACANNEIAVLIP 120
           ALPLDVRGTAFQQRVWQALRSIPPGVTLTYSELAARLGQPAAVRAVANACANNEIAVLIP
Sbjct: 275 ALPLDVRGTAFQQRVWQALRSIPPGVTLTYSELAARLGQPAAVRAVANACANNEIAVLIP 334

Query: 121 CHRIVRLDGSPSGYRWGIQRKAALLAREAANREGA 155
           CHRIVRLDGSPSGYRWGIQRKAALLAREAANREGA
Sbjct: 335 CHRIVRLDGSPSGYRWGIQRKAALLAREAANREGA 369


>gi|300309400|ref|YP_003773492.1| methylated-DNA-protein-cysteine
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score = 86.3 bits (212), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 1   LLVAATGQGICAVTLGEDADVLVRQLQDRFPQADLAPGDADFERTLAQVLAALEDPRQGA 60
           L + A G  + A+ L ED D L  +L +     D A        T  Q+       R+  
Sbjct: 15  LKLVAKGDHLAAI-LWEDDDALRVRLGEMVEDEDRAV----LIETEHQLREYFAGERESF 69

Query: 61  ALPLDVRGTAFQQRVWQALRSIPPGVTLTYSELAARLGQPAAVRAVANACANNEIAVLIP 120
            LPL   GT FQ++VW AL  IP G T TY ++A +LG   AVRAV  A   N I ++ P
Sbjct: 70  DLPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIARQLGNEKAVRAVGAANGRNPICIIAP 129

Query: 121 CHRIVRLDGSPSGYRWGIQRKAALLAREAANREG 154
           CHR++   G  +G+  G+  K  LLA E  + EG
Sbjct: 130 CHRVIGAGGELTGFAGGLHVKKLLLAIEGISTEG 163


>gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine
           S-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score = 68.9 bits (167), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 39  DADFERTLAQVLAALEDPRQGAALPLDVRGTAFQQRVWQALRSIPPGVTLTYSELAARLG 98
           DA   + + Q+   L DP     LP    G+AFQQRVWQA+ +IP G  LTY ++A R+ 
Sbjct: 60  DAVAAQAVQQITHYLADPAYRFDLPRLSVGSAFQQRVWQAIMAIPCGQVLTYGQVAKRIQ 119

Query: 99  QPAAVRAVANACANNEIAVLIPCHRIVRLDG 129
             +A RAV  AC  N   ++IPCHR+    G
Sbjct: 120 --SAPRAVGQACGANWYPLVIPCHRVTAAGG 148


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 437,256
Number of extensions: 16241
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 3
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)