BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0193.p (234 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 474 e-135 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 248 3e-67 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 231 6e-62 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 227 8e-61 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 227 8e-61 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 474 bits (1219), Expect = e-135, Method: Compositional matrix adjust. Identities = 234/234 (100%), Positives = 234/234 (100%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF Sbjct: 2 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 61 Query: 61 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 120 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF Sbjct: 62 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 121 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIR 180 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIR Sbjct: 122 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIR 181 Query: 181 ESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLGHG 234 ESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLGHG Sbjct: 182 ESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLGHG 235 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 248 bits (633), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 122/233 (52%), Positives = 169/233 (72%), Gaps = 1/233 (0%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 +LQ + + YG IEA+ G+SL++ +GEI L+GANGAGK+T L+ + G +A GRV+ Sbjct: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 Query: 61 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASN-EAIEQGIEYVFGL 119 GQD+ Q+ H I+ G+ EGR +LTV ENL +GA+ + + + + +E+V+ L Sbjct: 70 HGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVARDLEWVYSL 129 Query: 120 FPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTI 179 FP LK RAA AG +SGGEQQMLAIGRALM+KP++LLLDEP++GLAPL+I +IF I++ I Sbjct: 130 FPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEI 189 Query: 180 RESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 232 ++G+TV LVEQN +AL +A RGYVLE G +V+ D+GANLL N V +AYLG Sbjct: 190 NKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 231 bits (588), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 161/239 (67%), Gaps = 5/239 (2%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 ML +H YG +E LHG+S+ V KG++VTLIG+NGAGKTT + + G + G V Sbjct: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 Query: 61 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQG-----IEY 115 G++IT L +H+I R GLA SPEGRRVF +++V +NL +GAF A +G +E Sbjct: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER 120 Query: 116 VFGLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDI 175 LFPRLKER +Q AGT+SGGEQQMLA+ RA+M P ++LLDEP++GLAP+++ ++F I Sbjct: 121 ALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 Query: 176 IRTIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLGHG 234 I ++E GVT+ LVEQ A AL VAD GYVLENG + + L + V+ AYLG G Sbjct: 181 IVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGGG 239 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 227 bits (578), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 115/237 (48%), Positives = 164/237 (69%), Gaps = 3/237 (1%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRAS--SGRV 58 +L+ ++ YG I+A+ G+ L V +GE+VTLIGANGAGKTT L + G AS G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 59 IFEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEA-IEQGIEYVF 117 + GQ + ++ E+++ LA+ PEGR VF +++ ENL MGA+ + ++ I I+ F Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWF 124 Query: 118 GLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIR 177 +FPRLKERAAQ AGT+SGGEQQMLA+ RALMS P+LLLLDEP++GL+P+++ +IF++IR Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 178 TIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLGHG 234 + G+T+ LVEQNA AL A RGYV+E+G + M +L + V+ AYLG G Sbjct: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLGEG 241 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 227 bits (578), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 115/237 (48%), Positives = 164/237 (69%), Gaps = 3/237 (1%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRAS--SGRV 58 +L+ ++ YG I+A+ G+ L V +GE+VTLIGANGAGKTT L + G AS G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 59 IFEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEA-IEQGIEYVF 117 + GQ + ++ E+++ LA+ PEGR VF +++ ENL MGA+ + ++ I I+ F Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWF 124 Query: 118 GLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIR 177 +FPRLKERAAQ AGT+SGGEQQMLA+ RALMS P+LLLLDEP++GL+P+++ +IF++IR Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 178 TIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLGHG 234 + G+T+ LVEQNA AL A RGYV+E+G + M +L + V+ AYLG G Sbjct: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLGEG 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 713,741 Number of extensions: 29248 Number of successful extensions: 501 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 306 Number of HSP's successfully gapped: 149 Length of query: 234 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 152 Effective length of database: 1,231,600 Effective search space: 187203200 Effective search space used: 187203200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)