BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0192.p (258 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 525 e-150 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 239 1e-64 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 239 2e-64 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 239 2e-64 gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC t... 224 8e-60 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 525 bits (1352), Expect = e-150, Method: Compositional matrix adjust. Identities = 257/258 (99%), Positives = 257/258 (99%) Query: 1 MNASVKTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRP 60 MNASVKTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRP Sbjct: 1 MNASVKTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRP 60 Query: 61 TSGEITLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGL 120 TSGEI LDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGL Sbjct: 61 TSGEIMLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGL 120 Query: 121 LKTPAYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLL 180 LKTPAYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLL Sbjct: 121 LKTPAYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLL 180 Query: 181 DEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGT 240 DEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGT Sbjct: 181 DEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGT 240 Query: 241 PEQVRSDERVIKAYLGEE 258 PEQVRSDERVIKAYLGEE Sbjct: 241 PEQVRSDERVIKAYLGEE 258 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 239 bits (611), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 115/251 (45%), Positives = 171/251 (68%), Gaps = 1/251 (0%) Query: 8 MLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEITL 67 +L+++++S FGGL + GV+ V++ E+F +IGPNGAGKTTVFN I+G R +SG I Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 68 DGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPAYR 127 + I H++ ++G+ RTFQNIR+FK MT++EN++V H +N + S LL +R Sbjct: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 Query: 128 KSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGL 187 +E+EA +RA L + L A+ A +LSYG QR++E AR + TKP+LLLLDEP AG+ Sbjct: 122 NAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 Query: 188 NPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSD 247 NP EK EL I + ++ G + +IEHDM +MG+ +RI V+ GK I GTP+Q++++ Sbjct: 182 NPAEKTELMSEIVNI-KQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 Query: 248 ERVIKAYLGEE 258 + VI+AYLG+E Sbjct: 241 QEVIEAYLGKE 251 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 239 bits (610), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 115/251 (45%), Positives = 170/251 (67%), Gaps = 1/251 (0%) Query: 6 KTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEI 65 +T+L++ ++S RFGGL A++GV + ++ +++ +IGPNGAGKTT FN I+G Y+P +G Sbjct: 3 QTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTF 62 Query: 66 TLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPA 125 LDG + H+VA+ G+ RTFQNIRLF MTV+EN++V H + N+ + + A Sbjct: 63 ELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKA 122 Query: 126 YRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAA 185 R+ E +++ LD +G+ A R A LSYG QRR+EIAR + T P+LL LDEPAA Sbjct: 123 AREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAA 182 Query: 186 GLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVR 245 G+N EK L +L+ +++ E G +LLIEHD+ L+MG+ +RI V+++GKPI G P V+ Sbjct: 183 GMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQ 241 Query: 246 SDERVIKAYLG 256 + VI+AYLG Sbjct: 242 KNPAVIEAYLG 252 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 239 bits (609), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 115/251 (45%), Positives = 170/251 (67%), Gaps = 1/251 (0%) Query: 6 KTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEI 65 +T+L++ ++S RFGGL A++GV + ++ +++ +IGPNGAGKTT FN I+G Y+P +G Sbjct: 3 QTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTF 62 Query: 66 TLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPA 125 LDG + H+VA+ G+ RTFQNIRLF MTV+EN++V H + N+ + + A Sbjct: 63 ELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRHKA 122 Query: 126 YRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAA 185 R+ E +++ LD +G+ A R A LSYG QRR+EIAR + T P+LL LDEPAA Sbjct: 123 AREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAA 182 Query: 186 GLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVR 245 G+N EK L +L+ +++ E G +LLIEHD+ L+MG+ +RI V+++GKPI G P V+ Sbjct: 183 GMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQ 241 Query: 246 SDERVIKAYLG 256 + VI+AYLG Sbjct: 242 KNPAVIEAYLG 252 >gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 224 bits (570), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 107/256 (41%), Positives = 166/256 (64%) Query: 1 MNASVKTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRP 60 M AS +L++ +S+ FGG+ A+ V LA+ ERE+ A+IGPNGAGK+++ N +SG YRP Sbjct: 1 MRASAAPVLQLEGVSLSFGGVQALRHVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRP 60 Query: 61 TSGEITLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGL 120 T G ++L G + + P+ ++ + G+ RTFQN+ LFK ++V +N+++ + + + + + Sbjct: 61 TQGTVSLGGRRLRQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQI 120 Query: 121 LKTPAYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLL 180 + R+ +A +A + L L A A R+ G L YGLQ+RVE+AR ++ +PRLLLL Sbjct: 121 IGLGRARRERIDARAQAEQMMAFLDLRAYAERQVGGLPYGLQKRVELARALVARPRLLLL 180 Query: 181 DEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGT 240 DEP AG+ EK E++ + R + A+LLIEHD+ L+ G+SDR++V+ HG I G Sbjct: 181 DEPMAGMTVTEKSEMADFVRAARDQFDTAILLIEHDIGLVFGLSDRVVVLHHGSKIADGA 240 Query: 241 PEQVRSDERVIKAYLG 256 P VR D VI+AYLG Sbjct: 241 PAAVRQDAAVIEAYLG 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 771,446 Number of extensions: 31382 Number of successful extensions: 534 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 322 Number of HSP's successfully gapped: 145 Length of query: 258 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 175 Effective length of database: 1,226,865 Effective search space: 214701375 Effective search space used: 214701375 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)