BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0183.p (359 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 720 0.0 gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 245 4e-66 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 234 9e-63 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 228 5e-61 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 221 1e-58 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/359 (99%), Positives = 358/359 (99%) Query: 1 MSIEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVL 60 MSIEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVL Sbjct: 1 MSIEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVL 60 Query: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSETVIREKVKRL 120 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSE VIREKVKRL Sbjct: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRL 120 Query: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR Sbjct: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 Query: 181 RLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLGNV 240 RLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLGNV Sbjct: 181 RLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLGNV 240 Query: 241 NLFHGRLHEGVLDAGGARFEAPGHDNIRDAAGVGFVRPHDLDVERYSPGAEGIVVQLRRA 300 NLFHGRLHEGVLDAGGARFEAPGHDNIRDAAGVGFVRPHDLDVERYSPGAEGIVVQLRRA Sbjct: 241 NLFHGRLHEGVLDAGGARFEAPGHDNIRDAAGVGFVRPHDLDVERYSPGAEGIVVQLRRA 300 Query: 301 HAIGPLAQLELERDDNAELIEAVIPNERFAQLGLKNGETLVVRPRRLQVFAQQEGGPAR 359 HAIGPLAQLELERDDNAELIEAVIPNERFAQLGLKNGETLVVRPRRLQVFAQQEGGPAR Sbjct: 301 HAIGPLAQLELERDDNAELIEAVIPNERFAQLGLKNGETLVVRPRRLQVFAQQEGGPAR 359 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 245 bits (625), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 155/354 (43%), Positives = 214/354 (60%), Gaps = 12/354 (3%) Query: 3 IEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLD 62 + V ++KRFGSFTAL+ VSL GE+ LLGPSGCGKTTLLR IAGLE DSG++ D Sbjct: 13 LSVREVEKRFGSFTALDRVSLEVRRGEMVCLLGPSGCGKTTLLRTIAGLERQDSGRLHAD 72 Query: 63 GEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSETVIREKVKRLLE 122 G D S + R G +FQ YALF +++V +N+A+GL R Q+ RE+V +L Sbjct: 73 GRDISQLPPQARDYGILFQSYALFPNLSVADNVAYGLGRMSRQQK------RERVTEMLS 126 Query: 123 LVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRL 182 +V LD D+YP QLSGGQ+QR+ALARALA P +LLLDEP ALDA+VR+ L+ +RRL Sbjct: 127 MVGLDGSQDKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRL 186 Query: 183 HDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLGNVN- 241 + +T++ VTHDQEEA+ +AD++ +M G++EQ GTPE +Y PA+PFV F+G N Sbjct: 187 QKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPEQIYRRPATPFVADFIGQANW 246 Query: 242 LFHGRLHEGVLDAGGARFEAPGHDNIRDAAGVGFVRPHDLDVERYSPGAEGIVVQLRRAH 301 L RL + GG E ++ R A+G F RP + + A + ++ Sbjct: 247 LPFTRLSGSQVAVGGLHLEIQPDESDR-ASGRLFCRPEAVQLFSDESCANRFLARVVDRI 305 Query: 302 AIGPLAQLELERDD--NAELIEAVIP--NERFAQLGLKNGETLVVRPRRLQVFA 351 +G +L L D L+ V +ER A L ++G + + + LQVFA Sbjct: 306 YLGDRYRLALAADALPGQTLLADVSSQAHERVASLDTQDGLWVTLPRQSLQVFA 359 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 234 bits (596), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 132/285 (46%), Positives = 182/285 (63%), Gaps = 7/285 (2%) Query: 1 MSIEVHHIQKRFGSFT-ALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPD-SGQ 58 +SI + K F + T AL + L GE LLGPSGCGKTT LR+IAGLE PD G+ Sbjct: 8 VSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEGGR 67 Query: 59 VLLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSETVIREKVK 118 VL ED + + +R VG VFQ+YALF +M+V ENIA+G++++ + + E+V+ Sbjct: 68 VLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIR----KIAAGERAERVE 123 Query: 119 RLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRW 178 RLLE+V L L+ R QLSGGQ+QR+ALARALA+EPRVLLLDEP ALDAK+R+ +R Sbjct: 124 RLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSD 183 Query: 179 LRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLG 238 L +L L +T+I+VTHDQ EA+ + D++V+M +G++ QIGTP+ +Y HPA+ FV F+G Sbjct: 184 LNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFIG 243 Query: 239 NVNLFHGRLHEGVLDAGGARFEAPGHDNIRDAAGVGFVRPHDLDV 283 +N G + L P D + RP D++V Sbjct: 244 AMNRVDGIVAGDRLQLPTGTLPLP-PDAVAGQPAQALFRPEDVEV 287 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 228 bits (581), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 122/295 (41%), Positives = 181/295 (61%), Gaps = 20/295 (6%) Query: 2 SIEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLL 61 S+++ ++K+FGS + V ++ GE T L+GPSGCGK+TLLR++AGLE G++L+ Sbjct: 3 SVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILI 62 Query: 62 DGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSETVIREKVKRLL 121 G + ++R + VFQ+YAL+ HMTV +N+AF L + + + + E+VK+ Sbjct: 63 GGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDK----AFVDERVKKAA 118 Query: 122 ELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRR 181 +++ L+ L DRYP QLSGGQRQR+A+ RA+ +P+V L DEP LDAK+R ++R ++ Sbjct: 119 DILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKE 178 Query: 182 LHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLGN-- 239 LH L TSI+VTHDQ EA+ +ADQ+V+M G VEQ G P +Y++PA+ FV GF+G+ Sbjct: 179 LHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPA 238 Query: 240 VNLFHGRLHEGVLD-----AGGARFEAP------GHDNIRDAAGVGFVRPHDLDV 283 +N L A G R AP G+D + G VRP L + Sbjct: 239 MNFIPATLRRNATGAEVEFADGTRVPAPYGAALQGNDGQKVTYG---VRPEHLSI 290 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 221 bits (562), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 114/265 (43%), Positives = 171/265 (64%), Gaps = 15/265 (5%) Query: 2 SIEVHHIQKRFGSFTALNDVSLNFPA----GELTALLGPSGCGKTTLLRIIAGLESPDSG 57 +I + ++K +G+ T DV A GE ++GPSGCGK+TLLR++AGLE SG Sbjct: 3 AIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEISSG 62 Query: 58 QVLLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSETVIREKV 117 Q+++ + +ER + VFQ+YAL+ HMTV++N+A+GL++ Q S++ I +V Sbjct: 63 QIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKI----QGLSKSEIDARV 118 Query: 118 KRLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 +R +++L L +R P QLSGGQRQR+A+ RA+ +P V L DEP LDAK+R ++R Sbjct: 119 QRAAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRL 178 Query: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFL 237 +++LH L TS++VTHDQ EA+ + ++++MN+G EQIGTP VY PA+ FV F+ Sbjct: 179 EIQKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFI 238 Query: 238 GN--VNLFHGRLHEGVLDAGGARFE 260 G+ +NL G+ L A GA FE Sbjct: 239 GSPPMNLLQGK-----LSADGASFE 258 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,180,878 Number of extensions: 50663 Number of successful extensions: 596 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 352 Number of HSP's successfully gapped: 145 Length of query: 359 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 273 Effective length of database: 1,212,660 Effective search space: 331056180 Effective search space used: 331056180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)