BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0177.p (277 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310980|ref|YP_003775072.1| alkanesulfonates ABC transporte... 536 e-154 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 160 1e-40 gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 156 2e-39 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 154 6e-39 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 153 1e-38 >gi|300310980|ref|YP_003775072.1| alkanesulfonates ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 285 Score = 536 bits (1381), Expect = e-154, Method: Compositional matrix adjust. Identities = 276/277 (99%), Positives = 276/277 (99%) Query: 1 MRNDAQENQQVRRAAGRGVGIRLRALSKAFSGRTVLHEIDLDIAAGEFVAIVGRSGCGKS 60 MRNDAQENQQVRRAAGRGVGIRLRALSKAFSGRTVLHEIDLDIAAGEFVAIVGRSGCGKS Sbjct: 9 MRNDAQENQQVRRAAGRGVGIRLRALSKAFSGRTVLHEIDLDIAAGEFVAIVGRSGCGKS 68 Query: 61 TLLRLVAQLDAASGGELIYEHGGSGQPEVRIMFQDARLLPWKRVQANVALGLPRQAAPQA 120 TLLRLVAQLDAAS GELIYEHGGSGQPEVRIMFQDARLLPWKRVQANVALGLPRQAAPQA Sbjct: 69 TLLRLVAQLDAASCGELIYEHGGSGQPEVRIMFQDARLLPWKRVQANVALGLPRQAAPQA 128 Query: 121 LHALRQVGLDQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQT 180 LHALRQVGLDQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQT Sbjct: 129 LHALRQVGLDQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQT 188 Query: 181 LIESLWRERGFTALLVTHDVQEAIALADRVLLIEDGRVALDQRIDLARPRSRGQAQFAAL 240 LIESLWRERGFTALLVTHDVQEAIALADRVLLIEDGRVALDQRIDLARPRSRGQAQFAAL Sbjct: 189 LIESLWRERGFTALLVTHDVQEAIALADRVLLIEDGRVALDQRIDLARPRSRGQAQFAAL 248 Query: 241 EEAILARVLRHPGSESAIEELEPAFAPRGVQQVQWAI 277 EEAILARVLRHPGSESAIEELEPAFAPRGVQQVQWAI Sbjct: 249 EEAILARVLRHPGSESAIEELEPAFAPRGVQQVQWAI 285 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 160 bits (405), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 99/239 (41%), Positives = 135/239 (56%), Gaps = 17/239 (7%) Query: 21 IRLRALSKAFSGRTVLHEIDLDIAAGEFVAIVGRSGCGKSTLLRLVAQLDAASGGELIYE 80 + ++K F V+ E +IA+GE VA+VG SGCGKSTLL + A L+ S G + Sbjct: 3 LSFNNVAKHFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSV--- 59 Query: 81 HGGSGQ------PEVRIMFQDARLLPWKRVQANVALGL------PRQAAPQALHALRQVG 128 G GQ PE +MFQ+ L PW +Q NVAL L ++AA QA L V Sbjct: 60 -AGDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVK 118 Query: 129 LDQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIESLWRE 188 L +P +SGG RQR ALARA + P+ LLLDEP GALDALTR+ +Q + L R+ Sbjct: 119 LKGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQ 178 Query: 189 RGFTALLVTHDVQEAIALADRVLLIEDGRVALDQRIDLA-RPRSRGQAQFAALEEAILA 246 +G T +LVTHDV EA+ LADR+ + + + +L ++ ++FAA+ IL Sbjct: 179 QGPTVVLVTHDVDEALFLADRIFVFSPRPAKVLKEFNLVHHEKTHDLSEFAAIRRDILC 237 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 156 bits (394), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 102/246 (41%), Positives = 138/246 (56%), Gaps = 27/246 (10%) Query: 36 LHEIDLDIAAGEFVAIVGRSGCGKSTLLRLVAQLDAASGGELIY---EHGGSGQPEVRIM 92 L EI+L +A GEFV ++G SGCGKSTLL L+A L S G L+ E GG PE ++ Sbjct: 30 LREINLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPSEGVLLCANREIGGPA-PERAVV 88 Query: 93 FQDARLLPWKRVQANVALGLPR---------QAAPQALHALRQVGLDQRAGEWPAVLSGG 143 FQ+ LLPW N+ LG+ R Q + AL VGL + P +SGG Sbjct: 89 FQNHSLLPWLSCYENIYLGVERVFGATENRTQLRDRTRAALALVGLSAAENKRPNEISGG 148 Query: 144 QRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIESLWRERGFTALLVTHDVQEA 203 +QRV +ARAL +P++LL+DEP GALDALTR +Q + + + T ++VTHDV EA Sbjct: 149 MKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTDSTVVMVTHDVDEA 208 Query: 204 IALADRVLLIEDGRVALDQ---RIDLARPRSR---------GQAQFAALEEAILARVLRH 251 + L+DR++++ +G A + LARPR R GQ + A LE L R H Sbjct: 209 VLLSDRIVMMTNGPAATIGEVLEVKLARPRDRVVLAQDPEYGQYRTAVLE--FLYRKQAH 266 Query: 252 PGSESA 257 P E+A Sbjct: 267 PAREAA 272 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 154 bits (390), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 88/211 (41%), Positives = 131/211 (62%), Gaps = 15/211 (7%) Query: 21 IRLRALSKAFSGRTVLHEIDLDIAAGEFVAIVGRSGCGKSTLLRLVAQLDAASGGELIYE 80 +++RA+ K F ++ +D+DIA GEF +VG SGCGKSTLLR++A L+ +GGE++ Sbjct: 4 VQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILI- 62 Query: 81 HGGSG----QPEVR---IMFQDARLLPWKRVQANVALGLPRQAAPQAL------HALRQV 127 GG+ QP+ R ++FQ+ L P V+ N+A L +A A + Sbjct: 63 -GGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADIL 121 Query: 128 GLDQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIESLWR 187 GL+Q +P LSGGQRQRVA+ RA+V DPQ+ L DEPL LDA R++M+T I+ L + Sbjct: 122 GLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELHQ 181 Query: 188 ERGFTALLVTHDVQEAIALADRVLLIEDGRV 218 T++ VTHD EA+ +AD+++++ DG V Sbjct: 182 RLKTTSIYVTHDQIEAMTMADQIVVMRDGLV 212 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 153 bits (387), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/235 (39%), Positives = 135/235 (57%), Gaps = 14/235 (5%) Query: 21 IRLRALSKAFSGR----TVLHEIDLDIAAGEFVAIVGRSGCGKSTLLRLVAQLDAASGGE 76 IR++ + K F L +I+LDI G+FV ++G SGCGKSTLL +A S G+ Sbjct: 10 IRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQ 69 Query: 77 LIYEHGGSGQP--EVRIMFQDARLLPWKRVQANVALGLPRQAAPQA-LHA-----LRQVG 128 ++ + +P + ++FQ+ L PW V+ NVA GL + P+A +H L ++G Sbjct: 70 ILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLG 129 Query: 129 LDQRAGEWPAVLSGGQRQRVALARALVHDPQLLLLDEPLGALDALTRIEMQTLIESLWRE 188 L +P LSGG RQRVA+AR L D ++L+DEP GALDALTR +Q + +W E Sbjct: 130 LIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDE 189 Query: 189 RGFTALLVTHDVQEAIALADRVLLIE--DGRVALDQRIDLARPRSRGQAQFAALE 241 T + VTH ++EAI LADR++++ G V D ++L R R +F AL+ Sbjct: 190 FRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPEFNALK 244 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 839,748 Number of extensions: 35590 Number of successful extensions: 550 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 357 Number of HSP's successfully gapped: 142 Length of query: 277 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 193 Effective length of database: 1,222,130 Effective search space: 235871090 Effective search space used: 235871090 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)