BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0173.p
         (178 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310976|ref|YP_003775068.1| NAD(P)H-dependent FMN reductase...   275   1e-75
gi|300310283|ref|YP_003774375.1| NADH-dependent FMN reductase ox...    64   5e-12

>gi|300310976|ref|YP_003775068.1| NAD(P)H-dependent FMN reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score =  275 bits (704), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 158/177 (89%), Positives = 159/177 (89%), Gaps = 2/177 (1%)

Query: 4   EVGPKIFLLARRLERR--RGQGGAGHXRADWNDAEVKAALATVAEASAVVVATPVYKAAY 61
            VG K+  L  R  R   R   G    RADWNDAEVKAALATVAEASAVVVATPVYKAAY
Sbjct: 22  HVGDKLAQLGHRYARLEVRDLPGQAILRADWNDAEVKAALATVAEASAVVVATPVYKAAY 81

Query: 62  SGILKAFLDLLPQFGLTDKLVLPLATGGSQSHMLALDYALRPVLSSLNPKHVLPSIYATE 121
           SGILKAFLDLLPQFGLTDKLVLPLATGGSQSHMLALDYALRPVLSSLNPKHVLPSIYATE
Sbjct: 82  SGILKAFLDLLPQFGLTDKLVLPLATGGSQSHMLALDYALRPVLSSLNPKHVLPSIYATE 141

Query: 122 AQVTWSEEKGLVLDAPIEARVDEGVAQLSASLLALHKAAPEQFREIPFSQLQYSVSY 178
           AQVTWSEEKGLVLDAPIEARVDEGVAQLSASLLALHKAAPEQFREIPFSQLQYSVSY
Sbjct: 142 AQVTWSEEKGLVLDAPIEARVDEGVAQLSASLLALHKAAPEQFREIPFSQLQYSVSY 198


>gi|300310283|ref|YP_003774375.1| NADH-dependent FMN reductase
           oxidorreductase [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score = 64.3 bits (155), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%)

Query: 37  VKAALATVAEASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATGGSQSHMLA 96
           V+  +A +  A  +V  +PVY+ +YSG+ K   DL+PQ  L  K VL  ATGGS  H LA
Sbjct: 64  VRQKIAAIESADVLVAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRHALA 123

Query: 97  LDYALRPVLS 106
           +D+ LRP+ +
Sbjct: 124 IDHQLRPLFA 133


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 410,515
Number of extensions: 13321
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 2
Length of query: 178
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 99
Effective length of database: 1,245,805
Effective search space: 123334695
Effective search space used: 123334695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)