BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0171.p (261 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310974|ref|YP_003775066.1| transcription regulator protein... 530 e-152 gi|300310493|ref|YP_003774585.1| transcription regulator protein... 83 2e-17 gi|300309916|ref|YP_003774008.1| transcription regulator protein... 83 3e-17 gi|300313062|ref|YP_003777154.1| IclR family transcription regul... 79 3e-16 gi|300313290|ref|YP_003777382.1| IclR family transcription regul... 72 7e-14 >gi|300310974|ref|YP_003775066.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 261 Score = 530 bits (1366), Expect = e-152, Method: Compositional matrix adjust. Identities = 261/261 (100%), Positives = 261/261 (100%) Query: 1 MKKEAGETEQHISIQVIERMVSLLDALAAYPDPVSLKELSAATDLHPSTAHRILNDLVVK 60 MKKEAGETEQHISIQVIERMVSLLDALAAYPDPVSLKELSAATDLHPSTAHRILNDLVVK Sbjct: 1 MKKEAGETEQHISIQVIERMVSLLDALAAYPDPVSLKELSAATDLHPSTAHRILNDLVVK 60 Query: 61 RFVDRVEPGTYRLGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADEIV 120 RFVDRVEPGTYRLGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADEIV Sbjct: 61 RFVDRVEPGTYRLGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADEIV 120 Query: 121 YIDRSFSERSGMQVVRAIGGRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGHNKNSIT 180 YIDRSFSERSGMQVVRAIGGRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGHNKNSIT Sbjct: 121 YIDRSFSERSGMQVVRAIGGRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGHNKNSIT 180 Query: 181 DLAKLERELSMVRALGYARDNEELELGVRCMAAGICDDSGKLVAGLSISAPADRLQDEWV 240 DLAKLERELSMVRALGYARDNEELELGVRCMAAGICDDSGKLVAGLSISAPADRLQDEWV Sbjct: 181 DLAKLERELSMVRALGYARDNEELELGVRCMAAGICDDSGKLVAGLSISAPADRLQDEWV 240 Query: 241 EDLVSTASQISSALGYRQDRS 261 EDLVSTASQISSALGYRQDRS Sbjct: 241 EDLVSTASQISSALGYRQDRS 261 >gi|300310493|ref|YP_003774585.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 123/230 (53%), Gaps = 6/230 (2%) Query: 15 QVIERMVSLLDALAAYPDPVSLKELSAATDLHPSTAHRILNDLVVKRFVDRVEPGT--YR 72 Q +E+ +++L A A ++L ++++AT + S+A R+++ L ++ + P T Y+ Sbjct: 15 QSLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYICK-HPKTRRYQ 73 Query: 73 LGMRLLELG-NIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADEIVYIDRSFSERSG 131 L +++E+G N + + + V + A F+ L T +T+NL+ E+VY+ R F Sbjct: 74 LTPKVMEVGYNYLAADILV-DVANPFLSELANITGETVNLTEPYDGEMVYVAR-FVASKF 131 Query: 132 MQVVRAIGGRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGHNKNSITDLAKLERELSM 191 + + IG R P++ T++G+ +LS +P+ +A + H ++ TD+ + + L+ Sbjct: 132 IPIHMPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVEDIMQLLAA 191 Query: 192 VRALGYARDNEELELGVRCMAAGICDDSGKLVAGLSISAPADRLQDEWVE 241 R G+A + EEL LG +A+ + + K VA + + AP R E E Sbjct: 192 SRERGFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEAE 241 >gi|300309916|ref|YP_003774008.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 12/231 (5%) Query: 33 PVSLKELSAATDLHPSTAHRILNDLVVK-RFVDRVEPGTYRLGMRLLELGNIVKSRLSVR 91 P+++ +L+A + T +RIL L+ + V+ Y +G RL+ L + R +R Sbjct: 36 PLNIAQLAALSGYPRPTVYRILAALMAEGMVVENPRNKQYEVGPRLINLASRAWDRSDIR 95 Query: 92 EAALDFMRALHRKTHQTINLSVRQADEIVYIDRSFSERSGMQVVRA---IGGRAPLHLTS 148 A++ +R L T +T++L+V +VYI++ S Q VR IG R L+ +S Sbjct: 96 TTAIESLRQLRDLTRETVHLAVPSDHSMVYIEKLESP----QAVRMDSRIGTRVTLYSSS 151 Query: 149 TGKLFLSVDDPKNVRAYATRTGLAGHNKNSITDLAKLERELSMVRALGYARDNEELELGV 208 GK +L+ + + L N+ T+LA L ++ RA GYA D EE E + Sbjct: 152 VGKAYLAGLEEAHRERLMRTLHLQAFTANTHTELAALRADVEDTRARGYAEDREENEAQI 211 Query: 209 RCMAAGICDDSGKLVAGLSISAPADR----LQDEWVEDLVSTASQISSALG 255 C A I G VA +S+S P R Q +V+ L+ + IS L Sbjct: 212 FCYGAAIVGADGVPVACVSVSIPLYRRLPDAQQAYVQPLLQACATISRKLA 262 >gi|300313062|ref|YP_003777154.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 79.3 bits (194), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 11/221 (4%) Query: 16 VIERMVSLLDALAAY---PDPVSLKELSAATDLHPSTAHRILNDLVVKRFVDRVEPGTYR 72 +IE ++ D + A+ +S E++ L S A R L LV + + Sbjct: 16 LIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAAS-DGKKFW 74 Query: 73 LGMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADEIVYIDRSFSERSGM 132 L RLL LG V A + F++ L ++ ++ N S+ DEIVY+ R + Sbjct: 75 LMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRV----TAA 130 Query: 133 QVVRA---IGGRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGHNKNSITDLAKLEREL 189 Q+V A G R P + T+ G++ L + + ++AY R L H ++TD A L +E+ Sbjct: 131 QLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAALFQEI 190 Query: 190 SMVRALGYARDNEELELGVRCMAAGICDDSGKLVAGLSISA 230 +R GY + E+G+R +A + + +G+++ LS+++ Sbjct: 191 LTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTS 231 >gi|300313290|ref|YP_003777382.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 71.6 bits (174), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 8/229 (3%) Query: 20 MVSLLDALA---AYPDP---VSLKELSAATDLHPSTAHRILNDLVVKRFVDRVEPGTYRL 73 M SL LA A+ D +++ ++S T + + R L+ L + D + + L Sbjct: 16 MTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADS-DVNNFSL 74 Query: 74 GMRLLELGNIVKSRLSVREAALDFMRALHRKTHQTINLSVRQADEIVYIDRSFSERSGMQ 133 ++L LG S + +A ++ + R ++ +L+V E++Y+ RS + R M Sbjct: 75 RPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVARSAASRV-MS 133 Query: 134 VVRAIGGRAPLHLTSTGKLFLSVDDPKNVRAYATRTGLAGHNKNSITDLAKLERELSMVR 193 V G R P + TS G+ L+ ++AY + L + ++ +L L+ VR Sbjct: 134 VALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDILAGVR 193 Query: 194 ALGYARDNEELELGVRCMAAGICDDSGKLVAGLSISAPADRLQDEWVED 242 A GYA +EELE+G+R +A + SG ++A L++ A A R+ +E+ Sbjct: 194 ANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEE 242 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 752,708 Number of extensions: 28717 Number of successful extensions: 111 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 110 Number of HSP's successfully gapped: 7 Length of query: 261 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 178 Effective length of database: 1,226,865 Effective search space: 218381970 Effective search space used: 218381970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)