BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0170.p
         (366 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310973|ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidas...   746   0.0  
gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine carboxypepti...   215   5e-57

>gi|300310973|ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 366

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/366 (100%), Positives = 366/366 (100%)

Query: 1   MIKSALAVLTSLLFIHAGLAPAAAQTVNNTAKKPVKKAVAKRAAQPVSRTVAKGSLNNRE 60
           MIKSALAVLTSLLFIHAGLAPAAAQTVNNTAKKPVKKAVAKRAAQPVSRTVAKGSLNNRE
Sbjct: 1   MIKSALAVLTSLLFIHAGLAPAAAQTVNNTAKKPVKKAVAKRAAQPVSRTVAKGSLNNRE 60

Query: 61  KLVRKVTVVKGKRQVSYQRVSAAPSVPVVPPVMTAGDMAGLNLTPDPLALRSNVALVIDQ 120
           KLVRKVTVVKGKRQVSYQRVSAAPSVPVVPPVMTAGDMAGLNLTPDPLALRSNVALVIDQ
Sbjct: 61  KLVRKVTVVKGKRQVSYQRVSAAPSVPVVPPVMTAGDMAGLNLTPDPLALRSNVALVIDQ 120

Query: 121 ANSQVLFEKNSGVALPIASVTKLMTALVVVEARQNMEEVLTVTDDDVDREKHSSSRLRVG 180
           ANSQVLFEKNSGVALPIASVTKLMTALVVVEARQNMEEVLTVTDDDVDREKHSSSRLRVG
Sbjct: 121 ANSQVLFEKNSGVALPIASVTKLMTALVVVEARQNMEEVLTVTDDDVDREKHSSSRLRVG 180

Query: 181 ATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTRYVDSTGLS 240
           ATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTRYVDSTGLS
Sbjct: 181 ATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTRYVDSTGLS 240

Query: 241 SQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHALQYNSSNRLTSNKEWDIGLQ 300
           SQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHALQYNSSNRLTSNKEWDIGLQ
Sbjct: 241 SQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHALQYNSSNRLTSNKEWDIGLQ 300

Query: 301 KTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDAARMRKWLVDDQPSNLTRMKM 360
           KTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDAARMRKWLVDDQPSNLTRMKM
Sbjct: 301 KTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVGDAARMRKWLVDDQPSNLTRMKM 360

Query: 361 VRADEG 366
           VRADEG
Sbjct: 361 VRADEG 366


>gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine
           carboxypeptidase [Herbaspirillum seropedicae SmR1]
          Length = 385

 Score =  215 bits (547), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 117/233 (50%), Positives = 158/233 (67%), Gaps = 2/233 (0%)

Query: 117 VIDQANSQVLFEKNSGVALPIASVTKLMTALVVVEARQ-NMEEVLTVTDDDVDREKHSSS 175
           V+D+     LFE+N+    PIASVTKLMTA+V ++ +Q  M   L VT+DD+D  K + S
Sbjct: 148 VLDEQTGTPLFERNADTVAPIASVTKLMTAIVWLDQKQLAMGNRLEVTEDDLDTLKFTHS 207

Query: 176 RLRVGATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAMNAKARSLGMMDTRYVD 235
           RL VGA+LSR DMLHIALMSSENRAA+AL R+YPGG PAF+AAMNA+A++LGM  T + +
Sbjct: 208 RLGVGASLSRADMLHIALMSSENRAAAALSRDYPGGRPAFIAAMNARAQALGMSHTHFEN 267

Query: 236 STGLSSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSGHALQYNSSNRLTSNKEW 295
           +TGLS +NV++ R+LA LV AA  Y +IR  S D + M+      LQY +SNRL    + 
Sbjct: 268 ATGLSPENVSTPRELAALVQAANRYQLIRNDSLDKQKMINIGRGQLQYINSNRLIRYGQV 327

Query: 296 DIGLQKTGFINEAGHCLVMYTRI-EGRPIVMVFLDSKGRLSHVGDAARMRKWL 347
           +  +QKTGFINE+GH +V+   + + RP+++  L S        D  R+ KWL
Sbjct: 328 NASVQKTGFINESGHNMVLRMLVHDRRPVIVTMLGSGSADGSRLDGVRIAKWL 380


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 903,392
Number of extensions: 30747
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 3
Length of query: 366
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 280
Effective length of database: 1,212,660
Effective search space: 339544800
Effective search space used: 339544800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)