BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0154.p
         (402 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310958|ref|YP_003775050.1| nicotinate phosphoribosyltransf...   842   0.0  
gi|300313859|ref|YP_003777951.1| nicotinic acid phosphoribosyltr...   410   e-116

>gi|300310958|ref|YP_003775050.1| nicotinate
           phosphoribosyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 402

 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/402 (100%), Positives = 402/402 (100%)

Query: 1   MAACGQPHPDFMIITSLLDTDLYKFTMMQVVLHHFPGAQVEYRFKCRNENVDLRPYVDEI 60
           MAACGQPHPDFMIITSLLDTDLYKFTMMQVVLHHFPGAQVEYRFKCRNENVDLRPYVDEI
Sbjct: 1   MAACGQPHPDFMIITSLLDTDLYKFTMMQVVLHHFPGAQVEYRFKCRNENVDLRPYVDEI 60

Query: 61  RAEIAALCRLRFKEDELNYLRSLRFIKSDFVDFLDLFHLNEKYITVQPDPAGNGEIEISV 120
           RAEIAALCRLRFKEDELNYLRSLRFIKSDFVDFLDLFHLNEKYITVQPDPAGNGEIEISV
Sbjct: 61  RAEIAALCRLRFKEDELNYLRSLRFIKSDFVDFLDLFHLNEKYITVQPDPAGNGEIEISV 120

Query: 121 KGPWLHTIMFEVPVLAIVNEVYFRATQRSPDLEEGRARLRKKMSVITDDPELAGCKIADY 180
           KGPWLHTIMFEVPVLAIVNEVYFRATQRSPDLEEGRARLRKKMSVITDDPELAGCKIADY
Sbjct: 121 KGPWLHTIMFEVPVLAIVNEVYFRATQRSPDLEEGRARLRKKMSVITDDPELAGCKIADY 180

Query: 181 GTRRRFSRSWHAEVIDEMKQHMGDHFAGTSNVMYAMQHDLTPLGTMAHEYLQACQALGPR 240
           GTRRRFSRSWHAEVIDEMKQHMGDHFAGTSNVMYAMQHDLTPLGTMAHEYLQACQALGPR
Sbjct: 181 GTRRRFSRSWHAEVIDEMKQHMGDHFAGTSNVMYAMQHDLTPLGTMAHEYLQACQALGPR 240

Query: 241 LRDSQTFAFEMWAREYRGDLGITLSDVYGMDAFLRDYDMYFCKLFDGARHDSGDPFEWGE 300
           LRDSQTFAFEMWAREYRGDLGITLSDVYGMDAFLRDYDMYFCKLFDGARHDSGDPFEWGE
Sbjct: 241 LRDSQTFAFEMWAREYRGDLGITLSDVYGMDAFLRDYDMYFCKLFDGARHDSGDPFEWGE 300

Query: 301 RLIQHYRDNRVDPSSKVLVFSDSLDFDKVRALYLRFKDRAKVAFGVGTNLTNDLGYTPLQ 360
           RLIQHYRDNRVDPSSKVLVFSDSLDFDKVRALYLRFKDRAKVAFGVGTNLTNDLGYTPLQ
Sbjct: 301 RLIQHYRDNRVDPSSKVLVFSDSLDFDKVRALYLRFKDRAKVAFGVGTNLTNDLGYTPLQ 360

Query: 361 VVMKMVRCNGQPVAKLSDTPSKNMCDDPAYVNYLRQVFQIKA 402
           VVMKMVRCNGQPVAKLSDTPSKNMCDDPAYVNYLRQVFQIKA
Sbjct: 361 VVMKMVRCNGQPVAKLSDTPSKNMCDDPAYVNYLRQVFQIKA 402


>gi|300313859|ref|YP_003777951.1| nicotinic acid
           phosphoribosyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 400

 Score =  410 bits (1054), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/395 (51%), Positives = 266/395 (67%), Gaps = 8/395 (2%)

Query: 13  IITSLLDTDLYKFTMMQVVLHHFPGAQVEYRFKCRNENV-DLRPYVDEIRAEIAALCRLR 71
           ++ SLL+TDLYKFTM Q +LH  PGAQ EY F CRN+    L    +++  E+  LC LR
Sbjct: 4   VVRSLLETDLYKFTMWQALLHSHPGAQAEYTFVCRNQPAFPLAELKEDVERELDHLCCLR 63

Query: 72  FKEDELNYLRSLRFIKSDFVDFLDLFHLNEKYITVQPDPAGNGEIEISVKGPWLHTIMFE 131
            + +EL+YL  LR++KSDF+DFL LF    K+I V  D      + I  +GP +H + FE
Sbjct: 64  LRPEELDYLAQLRYMKSDFIDFLALFRFQRKFIEVSTD---GDRLCIVARGPQVHVMGFE 120

Query: 132 VPVLAIVNEVYFRATQRSPDLEEGRARLRKKMSVITD-DPELAG---CKIADYGTRRRFS 187
           + VL IVNE+YFR    +  L+E R RL+ K++++     E AG    +  D+G RRR+S
Sbjct: 121 IFVLYIVNELYFRRVGHAGALDEARRRLQDKIALLKSFASEPAGRHPFEFFDFGVRRRYS 180

Query: 188 RSWHAEVIDEMKQHMGDHFAGTSNVMYAMQHDLTPLGTMAHEYLQACQALGPRLRDSQTF 247
            +W  EV+  + + +  +F G+SNV  AMQ+ L P+GTMAHEYLQ+ Q+ G RLRD Q  
Sbjct: 181 GAWQEEVVATLAREVPQYFKGSSNVWLAMQYQLVPIGTMAHEYLQSYQSFGVRLRDFQKA 240

Query: 248 AFEMWAREYRGDLGITLSDVYGMDAFLRDYDMYFCKLFDGARHDSGDPFEWGERLIQHYR 307
           A E W +EYRGDLG+ L+DV GMDAFL D+D+YF KLFDG RHDSGDPFEWGE+ + HYR
Sbjct: 241 ALEAWVQEYRGDLGVALTDVVGMDAFLADFDLYFAKLFDGLRHDSGDPFEWGEKALAHYR 300

Query: 308 DNRVDPSSKVLVFSDSLDFDKVRALYLRFKDRAKVAFGVGTNLTNDLGYTPLQVVMKMVR 367
             R+D ++K LVFSD LD  +   LY  F DRA   FG+GTNL+ND G TPL +VMK+  
Sbjct: 301 KLRLDANTKRLVFSDGLDLPQALRLYRHFSDRAMTGFGIGTNLSNDTGITPLNIVMKLSS 360

Query: 368 CNGQPVAKLSDTPSKNMCDDPAYVNYLRQVFQIKA 402
           CNGQ VAKLSD+P K +C D  ++ YLRQ+F I A
Sbjct: 361 CNGQAVAKLSDSPGKTLCKDETFLAYLRQLFGIAA 395


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,250,920
Number of extensions: 51670
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 2
Length of query: 402
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,207,925
Effective search space: 380496375
Effective search space used: 380496375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)