BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0146.p (387 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC t... 776 0.0 gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC t... 247 1e-66 gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC t... 213 2e-56 gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC t... 162 6e-41 gi|300310991|ref|YP_003775083.1| branched-chain amino acid ABC t... 139 3e-34 >gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 394 Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/387 (99%), Positives = 385/387 (99%) Query: 1 LAALLALATLGAPVGVTAQPRAPLPDRQETATLAIGFAGPLSGPSGGVGKSMQNGVQLAL 60 LAALLALATLGAPVG TAQPRAPLPDRQETATLAIGFAGPLSGPSGGVGKSMQNGVQLAL Sbjct: 8 LAALLALATLGAPVGATAQPRAPLPDRQETATLAIGFAGPLSGPSGGVGKSMQNGVQLAL 67 Query: 61 AEANRRGLRIGGKSWQLRLIAQDDRADPATAEFVARSLVQQQVIAVVGHWTSGTSLAAAP 120 AEANRRGLRIGGKSWQLRLIAQDDRADPATAEFVARSLVQQQVIAVVGHWTSGTSLAAAP Sbjct: 68 AEANRRGLRIGGKSWQLRLIAQDDRADPATAEFVARSLVQQQVIAVVGHWTSGTSLAAAP 127 Query: 121 VYHRAGVIQVTPSAMSRRLTAMSYPRIFRTIPNNESLGRLAAGYAVDKLETRTIVTIDDR 180 VYHRAGVIQVTPSAMSRRLTAMSYPRIFRTIPNNESLGRLAAGYAVDKLETRTIVTIDDR Sbjct: 128 VYHRAGVIQVTPSAMSRRLTAMSYPRIFRTIPNNESLGRLAAGYAVDKLETRTIVTIDDR 187 Query: 181 TPFGQGLAEQFARTASERGAQVVGRYSVSDKTSDFNAALLEARKLQPDLIFFGGLDWQAG 240 TPFGQGLAEQFARTASERGAQVVGRYSVSDKTSDFNAALLEARKLQPDLIFFGGLDWQAG Sbjct: 188 TPFGQGLAEQFARTASERGAQVVGRYSVSDKTSDFNAALLEARKLQPDLIFFGGLDWQAG 247 Query: 241 VLAKSIRRLKLHARLMASPGTLGLPFLMRAGPDANGALVLEPGPPQDKMPGWKSFRQRYS 300 VLAKSIRRLKLHARLMASPGTLGLPFLMRAGPDANGALVLEPGPPQDKMPGWKSFRQRYS Sbjct: 248 VLAKSIRRLKLHARLMASPGTLGLPFLMRAGPDANGALVLEPGPPQDKMPGWKSFRQRYS 307 Query: 301 ENFDSDMDLYAVFAYEAAQAIIQGIRQAGSTDPERIAEAMHRLRFEGVSGPVAFNEEGDL 360 ENFDSDMDLYAVFAYEAAQAIIQGIRQAGS DPERIAEAMHRLRFEGVSGPVAFNEEGDL Sbjct: 308 ENFDSDMDLYAVFAYEAAQAIIQGIRQAGSADPERIAEAMHRLRFEGVSGPVAFNEEGDL 367 Query: 361 LQPSFTMYEVKDQRWQPVARFNGLPRQ 387 LQPSFTMYEVKDQRWQPVARFNGLPRQ Sbjct: 368 LQPSFTMYEVKDQRWQPVARFNGLPRQ 394 >gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 247 bits (631), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 127/342 (37%), Positives = 195/342 (57%), Gaps = 3/342 (0%) Query: 33 LAIGFAGPLSGPSGGVGKSMQNGVQLALAEANRRGLRIGGKSWQLRLIAQDDRADPATAE 92 + I GPLSGP+ +GK +NG ++A+ E N +G IGGK + L+ +DD +DP A Sbjct: 28 VKIAHVGPLSGPNAHMGKDNENGARMAVDELNAKGFTIGGKKVKFELVGEDDASDPKQAT 87 Query: 93 FVARSLVQQQVIAVVGHWTSGTSLAAAPVYHRAGVIQVTPSAMSRRLTAMSYPRIFRTIP 152 VA LV Q+V AV+GH SGT++ A+ +Y AG+ QV+PSA + + T + FR + Sbjct: 88 AVATKLVDQKVAAVIGHLNSGTTIPASKIYSDAGIPQVSPSATNPKYTQQGFKTAFRVVA 147 Query: 153 NNESLGRLAAGYAVDKLETRTIVTIDDRTPFGQGLAEQFARTASERGAQVVGRYSVSDKT 212 N+ LG YAV KL T+ I IDDRT +GQG+A++FA+ A G +VG +DK Sbjct: 148 NDAQLGAALGKYAVQKLGTKQIAVIDDRTAYGQGVADEFAKGAKAAGGTIVGTQYTNDKA 207 Query: 213 SDFNAALLEARKLQPDLIFFGGLDWQAGVLAKSIRRLKLHARLMASPG--TLGLPFLMRA 270 +DFNA L + +PD++FFGG+D G + + +++L + A+ M G T LP L Sbjct: 208 TDFNAILTSLKGKKPDVVFFGGMDAVGGPMLRQMKQLGISAKFMGGDGICTGSLPGLAGD 267 Query: 271 GPDANGALVLEPGPPQDK-MPGWKSFRQRYSENFDSDMDLYAVFAYEAAQAIIQGIRQAG 329 G + + E G + G FR Y + F D+ A +AY+A + + +AG Sbjct: 268 GLGDDQVICAEAGGVDEAGKKGMDDFRAAYKKKFGIDVVYNAAYAYDATMTVADAMAKAG 327 Query: 330 STDPERIAEAMHRLRFEGVSGPVAFNEEGDLLQPSFTMYEVK 371 S DP++ + ++ +GV+G +AF+ +GD+ S T+Y K Sbjct: 328 SADPKKYLPELAKISHKGVTGVIAFDAKGDIKDGSLTLYTYK 369 >gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 378 Score = 213 bits (543), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 121/356 (33%), Positives = 191/356 (53%), Gaps = 4/356 (1%) Query: 28 QETATLAIGFAGPLSGPSGGVGKSMQNGVQLALAEANRRGLRIGGKSWQLRLIAQDDRAD 87 QET + IGF+ PL+GP GK Q G+ +A+ N + + +GGK + +IA+DD+AD Sbjct: 25 QETQVVKIGFSSPLTGPQASAGKDNQGGLMMAIERLNAQPITVGGKKIKFDVIAEDDQAD 84 Query: 88 PATAEFVARSLVQQQVIAVVGHWTSGTSLAAAPVYHRAGVIQVTPSAMSRRLTAMSYPRI 147 P + VA+ L Q V A+VG + SG ++ A+ VY+ AG++ V A + ++T + + Sbjct: 85 PKSGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYNDAGIV-VATVASNPKITQQGFATL 143 Query: 148 FRTIPNNESLGRLAAGYAVDKLETRTIVTIDDRTPFGQGLAEQFARTASERGAQVVGRYS 207 FR ++ LG A YA +L+ + + IDDRT +GQGLA++F + A G VV Sbjct: 144 FRVAASDSQLGGKMALYAAKELKFKRVAVIDDRTAYGQGLAQEFIKVAKANGIDVVSTDF 203 Query: 208 VSDKTSDFNAALLEARKLQPDLIFFGGLDWQAGVLAKSIRRLKLHARLMASPGTLGLPFL 267 +DK +DF A L + +PD +F GG Q G + + +++L + LM G P + Sbjct: 204 TNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKRQMKQLGVDVPLMGGDGICS-PEM 262 Query: 268 MRAGPDANGALVL--EPGPPQDKMPGWKSFRQRYSENFDSDMDLYAVFAYEAAQAIIQGI 325 R G DA G V + G DK K F Y + ++ + YAV Y+ I Q + Sbjct: 263 GRLGGDAIGESVYCTQGGTMLDKAKEGKVFSDEYQKKYNRPAETYAVSFYDGMMLIAQAM 322 Query: 326 RQAGSTDPERIAEAMHRLRFEGVSGPVAFNEEGDLLQPSFTMYEVKDQRWQPVARF 381 +QA S DP++ A+ ++ ++GV+G F+ DL Q T+Y KD P+ + Sbjct: 323 KQANSVDPKQFGPALAKISYKGVAGQYDFDANHDLKQSPVTVYRFKDGLPVPLTSY 378 >gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 162 bits (409), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 117/358 (32%), Positives = 172/358 (48%), Gaps = 15/358 (4%) Query: 28 QETATLAIGFAGPLSGPSGGVGKSMQNGVQLALAEANRRGLRIGGKS-WQLRLIAQDDRA 86 QE T+A+GF G LS P + +S G QLA+ EAN L +S + L+ QDD Sbjct: 26 QERKTIALGFTGRLSEP---IAQSALQGAQLAIDEAN--ALAAKRRSPLRFELLPQDDHG 80 Query: 87 DPATAEFVARSLVQQQVIAVVGHWTSGTSLAAAPVYHRAGVIQVTPSAMSRRLTAMSYPR 146 + A +AR V+++V V+G W+S +LA A +Y A + Q+ +A S + T M Sbjct: 81 NENFAVNIARYYVKEKVAGVIGPWSSDAALATAAIYESAQIPQIGFTATSSQWTGMGNRM 140 Query: 147 IFRTIPNNESLGRLAAGYAVDKLETRTIVTIDDRTPFGQGLAEQFARTASERGAQV-VGR 205 FR + L A A L+ R I I + + LA+ Q+ + R Sbjct: 141 PFRVVGGTRELAATLAEVATRSLQGRRIFVIQSDAAYSRALADTLVENLGGSAQQIALAR 200 Query: 206 YSVSDKTSDFNAALLEARKLQPDLIFFGGLDWQAGVLAKSIRRLKLHARLMASPG--TLG 263 Y V +++DF+AAL A Q D+I F GL QA R + ARL+ + G L Sbjct: 201 YQVGRRSTDFHAALKAAEAHQADVIVFVGLYPQARAFIDGANRTRTTARLLLTGGASNLS 260 Query: 264 LPFLMRAGPDANGALVLEPGPPQDKMPGWKSFRQRYSENFDSDMDLYAVFAYEAAQAIIQ 323 LP P VLE + P WK Q Y F + Y+ +AY+AA + Sbjct: 261 LP-----APLELRLHVLEYEIARPHCPQWKVVTQTYQRRFGAAPTTYSFYAYDAASVLTA 315 Query: 324 GIRQAGSTDPERIAEAMHRLRFEGVSGPVAFNEEGDLLQPSFTMYEVKDQRWQPVARF 381 I QAGS + ++IA A+HR+R G+ G ++F+ G P +T+ ++ RWQ V F Sbjct: 316 AIVQAGSDNGDKIATALHRMRHAGLHGTLSFDATGANAHPRYTLLRYQE-RWQAVEVF 372 >gi|300310991|ref|YP_003775083.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 373 Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 95/342 (27%), Positives = 157/342 (45%), Gaps = 13/342 (3%) Query: 32 TLAIGFAGPLSGPSGGVGKSMQNGVQLALAEANRRGLRIGGKSWQLRLIAQDDRADPATA 91 T+ I AGP++G G ++ G A+ + N G G + + DD +P A Sbjct: 28 TVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAAG---GANGNKFEAVMMDDACEPKQA 84 Query: 92 EFVARSLVQQQVIAVVGHWTSGTSLAAAPVYHRAGVIQVTPSAMSRRLT-AMSYPRIFRT 150 VA +V Q + V+GH SG+++ A+ +Y GV+ +TPSA + +LT A + IFRT Sbjct: 85 VAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAKPHKFIFRT 144 Query: 151 IPNNESLGRLAAGYAVDKLETRTIVTIDDRTPFGQGLAEQFARTASERGAQVVGRYSVSD 210 I ++ G AA Y ++KL+ + + + D+ +GQG+A VV ++ Sbjct: 145 IGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQGVASSVKAALDAAKVPVVVFEGINA 204 Query: 211 KTSDFNAALLEARKLQPDLIFFGGLDWQAGVLAKSIRRLKLHARLMASPGTLGLPFLMRA 270 SD++A + + + D ++FGG + G++ + R + A M G A Sbjct: 205 GDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGIKAVFMGPEGVGNKDITAIA 264 Query: 271 GPDANGALVLEP----GPPQDKMPGWKSFRQRYSENFDSDMDLYAVFAYEAAQAIIQGIR 326 GP + G LV P P + + N M AY + I I Sbjct: 265 GPASEGMLVTLPADFAADPANAALVKAFAAAKRDPNGPFQMP-----AYSGVKIIADAIA 319 Query: 327 QAGSTDPERIAEAMHRLRFEGVSGPVAFNEEGDLLQPSFTMY 368 A STDPE++A +H F+ G V ++++GDL F ++ Sbjct: 320 GAKSTDPEKVAAYIHANSFKTPIGNVEYDKKGDLKSFKFVVF 361 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,246,283 Number of extensions: 52731 Number of successful extensions: 218 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 210 Number of HSP's successfully gapped: 9 Length of query: 387 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 300 Effective length of database: 1,207,925 Effective search space: 362377500 Effective search space used: 362377500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)