BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0143.p
         (101 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310945|ref|YP_003775037.1| periplasmic cytochrome c553 pro...   203   2e-54
gi|300309495|ref|YP_003773587.1| cytochrome c553 protein [Herbas...    59   1e-10

>gi|300310945|ref|YP_003775037.1| periplasmic cytochrome c553
           protein [Herbaspirillum seropedicae SmR1]
          Length = 106

 Score =  203 bits (517), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   VFLALVGVVGSASAADIVGNAKAAENKVSMCIGCHGIPGYKASYPEVYQVPMLGGQSAAY 60
           VFLALVGVVGSASAADIVGNAKAAENKVSMCIGCHGIPGYKASYPEVYQVPMLGGQSAAY
Sbjct: 6   VFLALVGVVGSASAADIVGNAKAAENKVSMCIGCHGIPGYKASYPEVYQVPMLGGQSAAY 65

Query: 61  IESALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQK 101
           IESALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQK
Sbjct: 66  IESALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQK 106


>gi|300309495|ref|YP_003773587.1| cytochrome c553 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score = 58.5 bits (140), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 20/115 (17%)

Query: 1   VFLALVGVVGSASAAD---------------IVGNAKAAENKVSMCIGCHGIPGYKASYP 45
           VF A + V  +A AAD               +  N  +A N V+ C+ CHG  G      
Sbjct: 12  VFAAFLAVASTAHAADDKKAPVKADPAKGEALYTNGDSARNIVA-CVSCHGAAGNST--- 67

Query: 46  EVYQVPMLGGQSAAYIESALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQ 100
            + Q P L GQ  AYI   L  ++  +R +P M  +A +LSD+DI ++AA+ + Q
Sbjct: 68  -ITQNPKLAGQHEAYIAKQLLNFRTPDRNNPVMSPMAKALSDEDIHNVAAFLAAQ 121


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 246,826
Number of extensions: 7903
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 3
Length of query: 101
Length of database: 1,619,870
Length adjustment: 70
Effective length of query: 31
Effective length of database: 1,288,420
Effective search space: 39941020
Effective search space used: 39941020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)