BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0142.p
         (745 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310943|ref|YP_003775035.1| site-specific recombinase trans...  1459   0.0  

>gi|300310943|ref|YP_003775035.1| site-specific recombinase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 738

 Score = 1459 bits (3776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 736/738 (99%), Positives = 738/738 (100%)

Query: 8   MLVVWRRMRHGMQARYMDRQDVGRQLEVLMRRADPASSWHERANWMIDVVEWLRHRPAVS 67
           MLVVWRRMRHGMQARYMDRQDVGRQLEVLMRRADPASSWHERANWMIDVVEWLRHRPAVS
Sbjct: 1   MLVVWRRMRHGMQARYMDRQDVGRQLEVLMRRADPASSWHERANWMIDVVEWLRHRPAVS 60

Query: 68  FLDRRAWHQVRRERLAILLDWLDQHREVRRAVQNALQKTLREATGPELFSTTGLPHEPGF 127
           FLDRRAWHQVRRERLAILLDWLDQHREVRRAVQNALQKTLREATGPELFSTTGLPHEPGF
Sbjct: 61  FLDRRAWHQVRRERLAILLDWLDQHREVRRAVQNALQKTLREATGPELFSTTGLPHEPGF 120

Query: 128 FGELSERLARLILPRHLSPTDLSSLFTALFPDPDDAVWLLELDNDLLQRLWKLMADDGIS 187
           FGELSERLARLILPRHLSPTDLSSLFTA+FPDPDDAVWLLELDNDLLQRLWKLMADDGIS
Sbjct: 121 FGELSERLARLILPRHLSPTDLSSLFTAMFPDPDDAVWLLELDNDLLQRLWKLMADDGIS 180

Query: 188 HMYWQQIEEAITYLTTTVVADGISPAFRQRLEPKMPMRATPFLALRREMEAWLRAQPGDM 247
           HMYWQQIEEAITYLTTTVVADGISPAFRQRLEPKMPMRATPFLALRREMEAWLRAQPGDM
Sbjct: 181 HMYWQQIEEAITYLTTTVVADGISPAFRQRLEPKMPMRATPFLALRREMEAWLRAQPGDM 240

Query: 248 GALRSVRMLVAVCHAQTDRIYAHLDEYGVSVSLVYRVERMRAHLQRIGRLIDVRSGMPGP 307
           GALRSVRMLVAVCHAQTDRIYAHLDEYGVSVSLVYRVERMRAHLQRIGRLIDVRSGMPGP
Sbjct: 241 GALRSVRMLVAVCHAQTDRIYAHLDEYGVSVSLVYRVERMRAHLQRIGRLIDVRSGMPGP 300

Query: 308 AISPAVPGMAVKPGAGRVQLLLCDLISAHHHRDSVRGLMRRSFALLARKMVERNADHREQ 367
           AISPAVPGMAVKPGAGRVQLLLCDLISAHHHRDSVRGLMRRSFALLARKMVERNADHREQ
Sbjct: 301 AISPAVPGMAVKPGAGRVQLLLCDLISAHHHRDSVRGLMRRSFALLARKMVERNADHREQ 360

Query: 368 AIARDAAGYRRVMRAGLLGGAVIAATALLKQSLSTLGVVHFVDGALASLNYAASFLLIAA 427
           AIARDAAGYRRVMRAGLLGGAVIAATALLKQSLSTLGVVHFVDGALASLNYAASFLLIAA
Sbjct: 361 AIARDAAGYRRVMRAGLLGGAVIAATALLKQSLSTLGVVHFVDGALASLNYAASFLLIAA 420

Query: 428 LGGVLATRQPAVTAPALASRMGDLDAEGMRDLIAESGRLLRSQSAGIFGNLLAVVPVTAA 487
           LGGVLATRQPAVTAPALASRMGDLDAEGMRDLIAESGRLLRSQSAGIFGNLLAVVPVTAA
Sbjct: 421 LGGVLATRQPAVTAPALASRMGDLDAEGMRDLIAESGRLLRSQSAGIFGNLLAVVPVTAA 480

Query: 488 LCALGWFALDRQPMSLEAARQSVASLSLVGPTPLYAALTGVLLWLASLVAGFADNWFALR 547
           LCALGWFALDR+PMSLEAARQSVASLSLVGPTPLYAALTGVLLWLASLVAGFADNWFALR
Sbjct: 481 LCALGWFALDRRPMSLEAARQSVASLSLVGPTPLYAALTGVLLWLASLVAGFADNWFALR 540

Query: 548 RVREVVSNHRRLVHGLGALRAQRCAAWLERNVATIAGSFALALLLGMAPVVAAFFSLPLD 607
           RVREVVSNHRRLVHGLGALRAQRCAAWLERNVATIAGSFALALLLGMAPVVAAFFSLPLD
Sbjct: 541 RVREVVSNHRRLVHGLGALRAQRCAAWLERNVATIAGSFALALLLGMAPVVAAFFSLPLD 600

Query: 608 IRHVTLAAGTLTAAAFSLGWQALTTPAFWLAAGGVAITGLLSVAVAFACALALALRSRDL 667
           IRHVTLAAGTLTAAAFSLGWQALTTPAFWLAAGGVAITGLLSVAVAFACALALALRSRDL
Sbjct: 601 IRHVTLAAGTLTAAAFSLGWQALTTPAFWLAAGGVAITGLLSVAVAFACALALALRSRDL 660

Query: 668 PRRARNVAMRAVLRRFVVRPLFFILPERAHAAVRDESDEDEQDDDDGGDGPGPDHQMSRL 727
           PRRARNVAMRAVLRRFVVRPLFFILPERAHAAVRDESDEDEQDDDDGGDGPGPDHQMSRL
Sbjct: 661 PRRARNVAMRAVLRRFVVRPLFFILPERAHAAVRDESDEDEQDDDDGGDGPGPDHQMSRL 720

Query: 728 ASVERDDEVQSSVRRHVA 745
           ASVERDDEVQSSVRRHVA
Sbjct: 721 ASVERDDEVQSSVRRHVA 738


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,282,023
Number of extensions: 96367
Number of successful extensions: 499
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 497
Number of HSP's successfully gapped: 1
Length of query: 745
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 653
Effective length of database: 1,184,250
Effective search space: 773315250
Effective search space used: 773315250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 134 (56.2 bits)