BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0132.p (361 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPas... 632 0.0 gi|300310937|ref|YP_003775029.1| heavy metal translocating P-typ... 167 2e-42 gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase ... 129 4e-31 gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase ... 120 1e-28 gi|300311691|ref|YP_003775783.1| cation transport ATPase [Herbas... 87 3e-18 >gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 778 Score = 632 bits (1630), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/325 (98%), Positives = 322/325 (99%) Query: 37 FREQGRQLRALALDKTGTLTFGKPRVTDVVSLQAQADQQALLQLAVSLAARSDHPVSRAI 96 + EQGRQLRALALDKTGTLTFGKPRVTDVVSLQAQADQQALLQLAVSLAARSDHPVSRAI Sbjct: 454 YLEQGRQLRALALDKTGTLTFGKPRVTDVVSLQAQADQQALLQLAVSLAARSDHPVSRAI 513 Query: 97 AAQEEIATVEVSEFAALAGRGVQGCINGQLLHLGNHRLVHELGQCSPELEARLQAFEKQG 156 AAQEEIATVEVSEFAALAGRGVQG INGQLLHLGNHRLVHELGQCSPELEARLQAFEKQG Sbjct: 514 AAQEEIATVEVSEFAALAGRGVQGRINGQLLHLGNHRLVHELGQCSPELEARLQAFEKQG 573 Query: 157 KTTTVLCLDGQPQLLVAVADTVRPSSRQAVAELRALGVEVIMLTGDNSHTAQAIAAQTGI 216 KTTTVLCLDGQPQLLVAVADTVRPSSRQAVAELRALGVEVIMLTGDNSHTAQAIAAQTGI Sbjct: 574 KTTTVLCLDGQPQLLVAVADTVRPSSRQAVAELRALGVEVIMLTGDNSHTAQAIAAQTGI 633 Query: 217 SDARGDQLPEDKLKVIEELSQRHGVRGVGMVGDGINDAPALARADIGFAMGAAGTDTALE 276 SDARGDQLPEDKLK IEELSQRHGVRGVGMVGDGINDAPALARADIGFAMGAAGTDTALE Sbjct: 634 SDARGDQLPEDKLKAIEELSQRHGVRGVGMVGDGINDAPALARADIGFAMGAAGTDTALE 693 Query: 277 TADVALMDDDLRKIPDFIRLSRKAHAVLVQNISIALGIKAVFLGLALVGMSSLWMAVFAD 336 TADVALMDDDLRKIPDFIRLSRKAHAVLVQNISIALGIKAVFLGLALVGMSSLWMAVFAD Sbjct: 694 TADVALMDDDLRKIPDFIRLSRKAHAVLVQNISIALGIKAVFLGLALVGMSSLWMAVFAD 753 Query: 337 MGASLIVVFNGLRLVRGLRQRKAAA 361 MGASLIVVFNGLRLVRGLRQRKAAA Sbjct: 754 MGASLIVVFNGLRLVRGLRQRKAAA 778 >gi|300310937|ref|YP_003775029.1| heavy metal translocating P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 744 Score = 167 bits (422), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/322 (36%), Positives = 180/322 (55%), Gaps = 12/322 (3%) Query: 39 EQGRQLRALALDKTGTLTFGKPRVTDV-VSLQAQADQQALLQLAVSLAARSDHPVSRAIA 97 E ++ A+A DKTGTLT G PR+ ++ + Q D+ L A+ A S+HP+ RA+ Sbjct: 416 EIAHRVNAVAFDKTGTLTLGHPRLLELEATPSTQPDELLALAAALQ--AHSEHPLGRAVR 473 Query: 98 AQEEIATVEVSEFA---ALAGRGVQGCINGQLLHLGNHRLVHELGQCSPELEARLQAFEK 154 + + ++AG G++G + G+ L LG+ R + +L +P L+AR + + Sbjct: 474 EAAAQSAQAARQAEQVRSVAGLGIEGVVEGRQLMLGSSRWMQQLQAHAPALQARAEQLQA 533 Query: 155 QGKTTTVLCLDGQPQL----LVAVADTVRPSSRQAVAELRALGVEVIMLTGDNSHTAQAI 210 QG+T + L + L+A D ++P ++ A+A L +GV ML+GDN AQ + Sbjct: 534 QGRTLSWLARRNDSGVEVLGLLAFGDQIKPGAQAAIATLHRMGVRSAMLSGDNLGAAQQV 593 Query: 211 AAQTGISDARGDQLPEDKLKVIEELSQRHGVRGVGMVGDGINDAPALARADIGFAMGAAG 270 A++ GI + R + LP DK + + L Q G + V MVGDG+NDAPALA AD+G AM + G Sbjct: 594 ASELGIQEVRAEVLPADKAEAVTALRQ-GGAQVVAMVGDGVNDAPALAAADVGMAM-STG 651 Query: 271 TDTALETADVALMDDDLRKIPDFIRLSRKAHAVLVQNISIALGIKAVFLGLALVGMSSLW 330 TD A++ A V LM D + D I +SR+ +A + QN+ A V + LA +G+ + Sbjct: 652 TDVAMQAAGVTLMHGDPGLVADAIDISRRTYAKIRQNLFWAFIYNLVGIPLAALGLLNPM 711 Query: 331 MAVFADMGASLIVVFNGLRLVR 352 +A A +S+ VV N L L R Sbjct: 712 LAGAAMAFSSVSVVSNALLLRR 733 >gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 839 Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 106/319 (33%), Positives = 165/319 (51%), Gaps = 15/319 (4%) Query: 47 LALDKTGTLTFGKPRVTDVVSLQAQADQQALLQLAVSLAARSDHPVSRAI---AAQEEIA 103 + DKTGTLT G+P++T +L + D Q L +A ++ S HP+++A+ A+ ++ Sbjct: 517 IVFDKTGTLTQGRPQLT---ALWSDVDCQRSLAIAAAMERGSLHPLAKALVEEGARRQVD 573 Query: 104 TVEVSEFAALAGRGVQGCINGQLLHLGNHRLVHEL-GQCSPELEARLQAFEKQGKTTTVL 162 +EV + ++ G G+QG I G L +G+ V L G P + LQ+ + + Sbjct: 574 ALEVEQLTSVTGAGMQGMIEGDLYRIGSRSFVAGLAGTALPPV--LLQSAASGAGSVYLG 631 Query: 163 CLDGQPQLLVAVADTVRPSSRQAVAELRALGVEVIMLTGDNSHTAQAIAAQTGISDARGD 222 DG +AD +R + VA RALG+ I+L+GD +AA GIS+ + Sbjct: 632 SSDGWLARF-DLADALRTDAVATVAAFRALGLRTILLSGDQPEVCAEVAAAAGISEVQAA 690 Query: 223 QLPEDKLKVIEELSQRHGVRGVGMVGDGINDAPALARADIGFAMGAAGTDTALETADVAL 282 P+ KL + L QR G V +VGDGINDA L D+ FAMG G A +AD + Sbjct: 691 CTPQGKLDYVRNL-QRDGAV-VAIVGDGINDAAMLRAGDVSFAMG-KGAALAQVSADAVI 747 Query: 283 MDDDLRKIPDFIRLSRKAHAVLVQNISIALGIKAVFLGLALVGMSSLWMAVFADMGASLI 342 M D L+ + D ++++ ++ QN+ A + + A G+ WM+ +SL+ Sbjct: 748 MSDRLQAVADCAAMAQRTMHIVRQNLVWAATYNFLAIPAAAFGLLDPWMSAVGMSLSSLL 807 Query: 343 VVFNGLRLVRGLRQRKAAA 361 VV N LRL R RQ ++AA Sbjct: 808 VVGNALRLSR--RQVRSAA 824 >gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 734 Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 103/285 (36%), Positives = 161/285 (56%), Gaps = 10/285 (3%) Query: 36 GFREQGRQLRALALDKTGTLTFGKPRVTDVVSLQA-QADQQALLQLAVSLAARSDHPVSR 94 G E+ Q+R L DKTGTLT GK R+ ++V+ + QAD+ LL+LA SL S+H +++ Sbjct: 266 GALEKLAQVRTLFFDKTGTLTAGKARLMNMVTTPSIQADE--LLRLAASLEQMSNHVIAQ 323 Query: 95 AI--AAQEEIATVEVS-EFAALAGRGVQGCINGQLLHLGNHRLVHELGQCSPELEARLQA 151 A+ AA E + + + G G+ G ++G+L+ +G + V P Sbjct: 324 AVVSAAIERALVLSIPDQVQEQPGAGLSGRVDGKLVRVGAMQYVIGPSAAPPWTSGLRDR 383 Query: 152 FEKQGKTTTVLCLDGQPQLLVAVADTVRPSSRQAVAELRALGVE-VIMLTGDNSHTAQAI 210 + +G + +DGQ ++ +AD +R + +A+ +LRALG + ++MLTGD A I Sbjct: 384 LKYEGGAGVCVAVDGQLCGVLYLADDIRLDTPRALRQLRALGAKRIVMLTGDRRDVAMTI 443 Query: 211 AAQTGISDARGDQLPEDKLKVIEELSQRHGVRGVGMVGDGINDAPALARADIGFAMGAAG 270 + G D +Q P KL I++ S R GV MVGDGINDAPALA ADIG AMGA G Sbjct: 444 GSSLGFDDVMPEQSPASKLAAIKQAS-REGV--TMMVGDGINDAPALAAADIGVAMGARG 500 Query: 271 TDTALETADVALMDDDLRKIPDFIRLSRKAHAVLVQNISIALGIK 315 A E+A V L+ D L ++ +R++++A + +Q++ +G+ Sbjct: 501 AAAAAESAQVVLLVDRLDRLAFAVRMAQQARKIALQSVVAGMGLS 545 >gi|300311691|ref|YP_003775783.1| cation transport ATPase [Herbaspirillum seropedicae SmR1] Length = 853 Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 27/192 (14%) Query: 171 LVAVADTVRPSSRQAVAELRALGVEVIMLTGDNSHTAQAIAAQTGISDAR---GDQL--- 224 L+A+AD +RP A+ + VIM+TGD+ TAQ IA Q GIS + GD++ Sbjct: 486 LLALADPLRPGVPDAIQRCHQAEIRVIMITGDHPSTAQNIARQAGISADQVLLGDEVQAM 545 Query: 225 -------------------PEDKLKVIEELSQRHGVRGVGMVGDGINDAPALARADIGFA 265 P KL+++ L + + M GDG+NDAPAL A +G A Sbjct: 546 AEHELARRLRTTNVCARITPLQKLRIVAALKDDGEI--IAMTGDGVNDAPALKAAHVGIA 603 Query: 266 MGAAGTDTALETADVALMDDDLRKIPDFIRLSRKAHAVLVQNISIALGIKAVFLGLALVG 325 MGA GTD A E + L+DD+ I + I + R+ + + + L + G+AL+ Sbjct: 604 MGARGTDVAREAGSLILLDDNFASIVEGILMGRRIFSRMRGAMIYVLAMHMPIAGMALLP 663 Query: 326 MSSLWMAVFADM 337 + W + M Sbjct: 664 VVFGWPLILYPM 675 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,064,995 Number of extensions: 44427 Number of successful extensions: 221 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 7 Length of query: 361 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 275 Effective length of database: 1,212,660 Effective search space: 333481500 Effective search space used: 333481500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)