BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0130.p
         (461 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310931|ref|YP_003775023.1| copper tolerance protein [Herba...   899   0.0  
gi|300313718|ref|YP_003777810.1| cobalt-zinc-cadmium resistance ...    55   9e-09

>gi|300310931|ref|YP_003775023.1| copper tolerance protein
           [Herbaspirillum seropedicae SmR1]
          Length = 461

 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/461 (98%), Positives = 459/461 (99%)

Query: 1   MIPHVSRPLRAAAVAACALLAGCAQLSPDGGFGQVEQASSTRLGQAPAWNRTPQQTQASS 60
           MIPHVSRPLRAAAVAACALLAGCAQLSPDGGFGQVEQASSTRLGQAPAWNRTPQQTQASS
Sbjct: 1   MIPHVSRPLRAAAVAACALLAGCAQLSPDGGFGQVEQASSTRLGQAPAWNRTPQQTQASS 60

Query: 61  EHVRQLLHDPANSTPRLASADDAVQIALINNPDLQADFAGLGVAEADLVQAGRLPNPGFS 120
           EHVRQLLHDPANSTPRLASADDAVQIALINNPDLQADFAGLGVAEADLVQAGRLPNPGFS
Sbjct: 61  EHVRQLLHDPANSTPRLASADDAVQIALINNPDLQADFAGLGVAEADLVQAGRLPNPGFS 120

Query: 121 FKRSHAGDDLKIERSLSLGLMRLLTLPAASRIEQRRFEQVRLSLASRVLSVAAQTRQAYY 180
           FKRSHAGDDLKIERSLSLGLMRLLTLPAASRIEQRRFEQVRLSLASRVLSVAAQTRQAYY
Sbjct: 121 FKRSHAGDDLKIERSLSLGLMRLLTLPAASRIEQRRFEQVRLSLASRVLSVAAQTRQAYY 180

Query: 181 QAVAAQQGLQYQEQVADAAEAAHALAAQMARLGNISQLDSAREQFFYGQAQTSLQQARRL 240
           QAVAAQQGLQYQ+QVADAAEAAHALAAQMARLGNISQLDSAREQFFYGQAQTSLQQARRL
Sbjct: 181 QAVAAQQGLQYQKQVADAAEAAHALAAQMARLGNISQLDSAREQFFYGQAQTSLQQARRL 240

Query: 241 AAQHKESLARLLGLAPDFALPAQLPALPRQLEAVDDIERQALQQRLDVEAARTELEGLQT 300
           AAQHKESLARLLGLAPDF+LPAQLPALPRQLEAVDDIE+QALQQRLDVEAARTELEGLQT
Sbjct: 241 AAQHKESLARLLGLAPDFSLPAQLPALPRQLEAVDDIEQQALQQRLDVEAARTELEGLQT 300

Query: 301 SLGLTRATRLVNVLDLGALRTTESGKPVENGYEISLEIPLFDWGEARVAKAEAIYLQGAH 360
           SLGLTRATRLVNVLDLGALRTTESGKPVENGYEISLEIPLFDWGEARVAKAEAIYLQGAH
Sbjct: 301 SLGLTRATRLVNVLDLGALRTTESGKPVENGYEISLEIPLFDWGEARVAKAEAIYLQGAH 360

Query: 361 KLAAAVLDARAQAPLAWRERQDAYTLARRYQEEWLPLRQRIADENVLRYNGMLVSVFTLL 420
           KLAAAVLDARAQA LAWRERQDAYTLARRYQ+EWLPLRQRIADENVLRYNGMLVSVF LL
Sbjct: 361 KLAAAVLDARAQARLAWRERQDAYTLARRYQDEWLPLRQRIADENVLRYNGMLVSVFILL 420

Query: 421 ADAREQAATVNAAIEAQRDFWIADASLQLALGGRPTQGKQP 461
           ADAREQAATVNAAIEAQRDFWIADASLQLALGGRPTQGKQP
Sbjct: 421 ADAREQAATVNAAIEAQRDFWIADASLQLALGGRPTQGKQP 461


>gi|300313718|ref|YP_003777810.1| cobalt-zinc-cadmium resistance
           cation efflux system outer membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 18/223 (8%)

Query: 58  ASSEHVRQLLHDPANSTPRLASADDAVQIALINNPDLQADFAGLGVAEADLVQAGRLPNP 117
           A++EH +        S PRL S   A+ +AL  N  L A    +   EA ++QAG  PNP
Sbjct: 26  ANTEHPQPHTASSLASEPRLLSLPAAISLALEQNKTLAAARKEIEAVEATIIQAGARPNP 85

Query: 118 GFS-----FKRSHAGDDLKIERSLSLGLMRLLTLPAASRIE--QRRFEQVRLSLASRVLS 170
            FS     F++S      ++ + + LG  R      ++RIE  QR  E   L  A++   
Sbjct: 86  EFSALMEDFRKSSRTTTYQLTQPIELGGKR------SARIEAAQRTREMALLDYAAKRTE 139

Query: 171 VAAQTRQAYYQAVAAQQGLQYQEQVADAAEAAHALAAQMARLGNISQLDSAREQFFYGQA 230
           + A    AYY+ + A +  +  +++   A+ +  + ++    G IS ++  + +     A
Sbjct: 140 IRAGVIAAYYEVMVAMERQRLAKELLGLAKTSADMTSRRVTAGKISPVEQTKARVAESSA 199

Query: 231 QTSLQQARRLAAQHKESLARLLG-LAPDFALP----AQLPALP 268
           Q  L QA       ++ LA   G +   F L       LPALP
Sbjct: 200 QLELHQADSDVLLAQKKLATFWGSVGNAFQLTDGGVESLPALP 242


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,073,626
Number of extensions: 37124
Number of successful extensions: 186
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 2
Length of query: 461
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 373
Effective length of database: 1,203,190
Effective search space: 448789870
Effective search space used: 448789870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)