BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0126.p
         (280 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310922|ref|YP_003775014.1| formyltetrahydrofolate deformyl...   581   e-167
gi|300310510|ref|YP_003774602.1| phosphoribosylglycinamide formy...   110   2e-25

>gi|300310922|ref|YP_003775014.1| formyltetrahydrofolate deformylase
           [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score =  581 bits (1497), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 280/280 (100%), Positives = 280/280 (100%)

Query: 1   LSCLDQRGIVHRVSGFLADHGCNIIDSAQFGDAQSKLFFMRVHFSSEDASVSDAALRADF 60
           LSCLDQRGIVHRVSGFLADHGCNIIDSAQFGDAQSKLFFMRVHFSSEDASVSDAALRADF
Sbjct: 10  LSCLDQRGIVHRVSGFLADHGCNIIDSAQFGDAQSKLFFMRVHFSSEDASVSDAALRADF 69

Query: 61  GVLGDALQMNWQLHDAGKKPRVMLMVSKIGHCLNDLLFRYKSGLLPVEIPAIVSNHTDFY 120
           GVLGDALQMNWQLHDAGKKPRVMLMVSKIGHCLNDLLFRYKSGLLPVEIPAIVSNHTDFY
Sbjct: 70  GVLGDALQMNWQLHDAGKKPRVMLMVSKIGHCLNDLLFRYKSGLLPVEIPAIVSNHTDFY 129

Query: 121 QLAASYNIPFHHLPLATGAPMEVKRAQEQRIMEIVEANQIDLVVLARYMQILSPEMCEAL 180
           QLAASYNIPFHHLPLATGAPMEVKRAQEQRIMEIVEANQIDLVVLARYMQILSPEMCEAL
Sbjct: 130 QLAASYNIPFHHLPLATGAPMEVKRAQEQRIMEIVEANQIDLVVLARYMQILSPEMCEAL 189

Query: 181 RGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHFVTGDLDEGPIIEQGVERVDHSM 240
           RGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHFVTGDLDEGPIIEQGVERVDHSM
Sbjct: 190 RGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHFVTGDLDEGPIIEQGVERVDHSM 249

Query: 241 GPDTLTAIGRDIECVVLARAVKWFTEHRILLNGHKTVIFN 280
           GPDTLTAIGRDIECVVLARAVKWFTEHRILLNGHKTVIFN
Sbjct: 250 GPDTLTAIGRDIECVVLARAVKWFTEHRILLNGHKTVIFN 289


>gi|300310510|ref|YP_003774602.1| phosphoribosylglycinamide
           formyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score =  110 bits (274), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 103/196 (52%), Gaps = 5/196 (2%)

Query: 82  VMLMVSKIGHCLNDLLFRYKSGLLPVEIPAIVSNHTDFYQLA--ASYNIPFHHLPLATGA 139
           +++++S  G  +  ++   ++   P +I A++SN  D   LA  A   IP   +P     
Sbjct: 4   IVILISGRGSNMEAIVRAAQAEQWPAKIAAVISNRADASGLAFAAQRGIPTAVIP---SR 60

Query: 140 PMEVKRAQEQRIMEIVEANQIDLVVLARYMQILSPEMCEALRGRAINIHHSFLPSFKGAK 199
               +   +  + + ++    DLVVLA +M+IL+    E  +GR +NIH S LPSF G  
Sbjct: 61  DYSTREQFDSALRDKIDTFAPDLVVLAGFMRILTAPFVEHYQGRMLNIHPSLLPSFPGLA 120

Query: 200 PYYQAHDRGVKLIGATAHFVTGDLDEGPIIEQGVERVDHSMGPDTLTAIGRDIECVVLAR 259
            + QA   GVKL GAT HFVT DLD GPI+ Q    V      + L     + E V+  R
Sbjct: 121 THRQALAAGVKLHGATVHFVTPDLDHGPIVAQAAVPVQEEDSEEALAERVLEQEHVIYPR 180

Query: 260 AVKWFTEHRILLNGHK 275
           AV+WF + R+ L+GH+
Sbjct: 181 AVRWFIDGRLRLDGHR 196


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 877,553
Number of extensions: 36147
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,222,130
Effective search space: 239537480
Effective search space used: 239537480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)