BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0119.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310909|ref|YP_003775001.1| serine O-acetyltransferase [Her...   629   0.0  
gi|300311650|ref|YP_003775742.1| serine O-acetyltransferase [Her...   308   4e-85
gi|300311189|ref|YP_003775281.1| serine O-acetyltransferase [Her...   138   5e-34

>gi|300310909|ref|YP_003775001.1| serine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  629 bits (1623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/311 (100%), Positives = 311/311 (100%)

Query: 1   MDTSNTPELSALVDTAGLGLSAVVAGLRTSREVTNKIRYRGEIRELPSREAMHKLLQHLQ 60
           MDTSNTPELSALVDTAGLGLSAVVAGLRTSREVTNKIRYRGEIRELPSREAMHKLLQHLQ
Sbjct: 1   MDTSNTPELSALVDTAGLGLSAVVAGLRTSREVTNKIRYRGEIRELPSREAMHKLLQHLQ 60

Query: 61  AALFPTHYGHTDLSDETIDYFVGSQLNTGLSILKEQVRRSLYFSSDLQEDAPLREQAARI 120
           AALFPTHYGHTDLSDETIDYFVGSQLNTGLSILKEQVRRSLYFSSDLQEDAPLREQAARI
Sbjct: 61  AALFPTHYGHTDLSDETIDYFVGSQLNTGLSILKEQVRRSLYFSSDLQEDAPLREQAARI 120

Query: 121 TRDFAHQLPAVRDVLVSDIQAAYHGDPAASSISEILLCYPGTTAIIYHRLAHALHQLGAP 180
           TRDFAHQLPAVRDVLVSDIQAAYHGDPAASSISEILLCYPGTTAIIYHRLAHALHQLGAP
Sbjct: 121 TRDFAHQLPAVRDVLVSDIQAAYHGDPAASSISEILLCYPGTTAIIYHRLAHALHQLGAP 180

Query: 181 LLARLIADIAHSATGIDIHPAAQIGPSFFIDHGTGVVIGETTIIGRNVRLYQAVTLGAKR 240
           LLARLIADIAHSATGIDIHPAAQIGPSFFIDHGTGVVIGETTIIGRNVRLYQAVTLGAKR
Sbjct: 181 LLARLIADIAHSATGIDIHPAAQIGPSFFIDHGTGVVIGETTIIGRNVRLYQAVTLGAKR 240

Query: 241 FPQEPDGSLVKGIPRHPIVEDDVVVYAGATLLGRITIGRGSVIGGNVWLTHSVPAGSNVS 300
           FPQEPDGSLVKGIPRHPIVEDDVVVYAGATLLGRITIGRGSVIGGNVWLTHSVPAGSNVS
Sbjct: 241 FPQEPDGSLVKGIPRHPIVEDDVVVYAGATLLGRITIGRGSVIGGNVWLTHSVPAGSNVS 300

Query: 301 QAEMLSDCRQP 311
           QAEMLSDCRQP
Sbjct: 301 QAEMLSDCRQP 311


>gi|300311650|ref|YP_003775742.1| serine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  308 bits (789), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 158/267 (59%), Positives = 194/267 (72%), Gaps = 2/267 (0%)

Query: 44  RELPSREAMHKLLQHLQAALFPTHYGHTDLSDETIDYFVGSQLNTGLSILKEQVRRSLYF 103
           RE PSR+A+  ++  L+  LFP   G  DL  E+ ++ V   L+  L  L  QVR  L +
Sbjct: 33  REFPSRDALDGIVTTLKGVLFPMRLGPPDLRQESENFHVAHALDAALHALLGQVRLELKY 92

Query: 104 SSDL--QEDAPLREQAARITRDFAHQLPAVRDVLVSDIQAAYHGDPAASSISEILLCYPG 161
           S+ L  +    L + A  ITR F   LP +R  L +D+ AAY GDPAA S+ E+LLCYPG
Sbjct: 93  SAGLSGRPTPNLEQDAISITRAFGASLPQIRSQLDTDVLAAYQGDPAARSVDEVLLCYPG 152

Query: 162 TTAIIYHRLAHALHQLGAPLLARLIADIAHSATGIDIHPAAQIGPSFFIDHGTGVVIGET 221
             A+I++RLAH L+QLG PLLAR+IA++AH+ATGIDIHP AQIG  FFIDHGTGVVIGET
Sbjct: 153 ALAMIHYRLAHRLYQLGLPLLARIIAELAHAATGIDIHPGAQIGTGFFIDHGTGVVIGET 212

Query: 222 TIIGRNVRLYQAVTLGAKRFPQEPDGSLVKGIPRHPIVEDDVVVYAGATLLGRITIGRGS 281
            +IG NVR+YQAVTLGAKRFP + DG L KG  RHPIVEDDVV+YAGAT+LGRI +GRG+
Sbjct: 213 AVIGNNVRIYQAVTLGAKRFPTDADGKLEKGRARHPIVEDDVVIYAGATILGRIRLGRGA 272

Query: 282 VIGGNVWLTHSVPAGSNVSQAEMLSDC 308
           VIGGNVWLTH VPAG+++SQA    D 
Sbjct: 273 VIGGNVWLTHDVPAGAHISQAASREDS 299


>gi|300311189|ref|YP_003775281.1| serine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 250

 Score =  138 bits (348), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 95/163 (58%), Gaps = 8/163 (4%)

Query: 135 LVSDIQAAYHGDPAASSISEILLCYPGTTAIIYHRLAHALHQLGAPLLARLIADIAHSAT 194
           L  DI +    DPAA +  E+L CYPG  A+I HR A A  Q     L R I+ +    T
Sbjct: 5   LREDIASIRARDPAARNSWEVLTCYPGLHALILHRWAKACWQAQLKWLGRFISQLGRMLT 64

Query: 195 GIDIHPAAQIGPSFFIDHGTGVVIGETTIIGRNVRLYQAVTLGAKRFPQEPDGSLVKGIP 254
           GI+IHP A IG   FIDHG GVVIGET I+G +  +YQ VTLG          SLVKG  
Sbjct: 65  GIEIHPGATIGRRVFIDHGMGVVIGETAIVGDDSTIYQGVTLGGT--------SLVKGAK 116

Query: 255 RHPIVEDDVVVYAGATLLGRITIGRGSVIGGNVWLTHSVPAGS 297
           RHP +   V++ AGA +LG  T+G G+ +G N  +T  VPAG+
Sbjct: 117 RHPTLGRGVIIGAGAKVLGGFTVGDGAKVGSNAVVTKEVPAGT 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,052,460
Number of extensions: 47923
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 3
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)