BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0117.p
         (403 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310907|ref|YP_003774999.1| major facilitator superfamily p...   738   0.0  

>gi|300310907|ref|YP_003774999.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 383

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/383 (99%), Positives = 382/383 (99%)

Query: 21  MTTPDLRQADLHSRHAAMSLSAALPCDIVLYLLLPMYADQFHISLAEAGVLLAANRLVRI 80
           MTTPDLRQADLHSRHAAMSLSAALPCDIVLYLLLPMYADQFHISLAEAGVLLAANRLVRI
Sbjct: 1   MTTPDLRQADLHSRHAAMSLSAALPCDIVLYLLLPMYADQFHISLAEAGVLLAANRLVRI 60

Query: 81  AGYRWVARFYAQRGDRPTCTLAVCAAIVCALGYTMASGFWALLPLRLLWGMAFAGLNLST 140
           AGYRWVARFYAQRGDRPTCTLAVCAAIVCALGYT ASGFWALLPLRLLWGMAFAGLNLST
Sbjct: 61  AGYRWVARFYAQRGDRPTCTLAVCAAIVCALGYTAASGFWALLPLRLLWGMAFAGLNLST 120

Query: 141 QAMSTSNPQGAARRSGRSRGVIAIGPMLWLPTAALLAPHIGPRLVFALVAATALLGLLAA 200
           QAMSTSNPQGAARRSGRSRGVIAIGPMLWLPTAALLAPHIGPRLVFALVAATALLGLLAA
Sbjct: 121 QAMSTSNPQGAARRSGRSRGVIAIGPMLWLPTAALLAPHIGPRLVFALVAATALLGLLAA 180

Query: 201 RRLPQHAYAPPQPRRWKLPNALDWWSFLEGLTLDGLFIVGLAYMSKQSFGADGELVAGVL 260
           RRLPQHAYAPPQPRRWKLPNALDWWSFLEGLTLDGLFIVGLAYMSKQSFGADGELVAGVL
Sbjct: 181 RRLPQHAYAPPQPRRWKLPNALDWWSFLEGLTLDGLFIVGLAYMSKQSFGADGELVAGVL 240

Query: 261 MALRYAGEIVLSPLGGWLAERFGAVKVLVTLSLATCVALVGFGGGLLWLFAGVIVILRAL 320
           MALRYAGEIVLSPLGGWLAERFGAVKVLVTLSLATCVALVGFGGGLLWLFAGVIVILRAL
Sbjct: 241 MALRYAGEIVLSPLGGWLAERFGAVKVLVTLSLATCVALVGFGGGLLWLFAGVIVILRAL 300

Query: 321 QLPLLAPIVAARTAPEQRVHALAGRAIWRDIGAGMGPMLAGLLLPVMSSLWLYSLAASAL 380
           QLPLLAPIVAARTAPEQRVHALAGRAIWRDIGAGMGPMLAGLLLPVMSSLWLYSLAASAL
Sbjct: 301 QLPLLAPIVAARTAPEQRVHALAGRAIWRDIGAGMGPMLAGLLLPVMSSLWLYSLAASAL 360

Query: 381 ALAAIACGGAPAPVPSVSVSSQG 403
           ALAAIACGGAPAPVPSVSVSSQG
Sbjct: 361 ALAAIACGGAPAPVPSVSVSSQG 383


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,010,688
Number of extensions: 36145
Number of successful extensions: 258
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 316
Effective length of database: 1,207,925
Effective search space: 381704300
Effective search space used: 381704300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)