BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0111.p
         (443 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310898|ref|YP_003774990.1| acyl coenzyme A thioester hydro...   893   0.0  

>gi|300310898|ref|YP_003774990.1| acyl coenzyme A thioester
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 443

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/443 (99%), Positives = 440/443 (99%)

Query: 1   MPNFSIEVSPADDLIDVPRRIIVRGAHPGEPVRISSATLRNGTQWRSTACYIADAHGNVD 60
           MPNFSI+VSPADDLIDVPRRIIVRGAHPGEPVRISSATLRNGTQWRSTACYIADAHGNVD
Sbjct: 1   MPNFSIDVSPADDLIDVPRRIIVRGAHPGEPVRISSATLRNGTQWRSTACYIADAHGNVD 60

Query: 61  VSMNPAIDGDYYGIDPMGLLWSQKPEQAGRRDQFHADVMAPLETTLTVSALEQPGLPPCT 120
           VSMNPAIDGDYYGIDPMGLLWSQKP QAGRRDQFHADVMAPLETTLTVSALEQPGLPPCT
Sbjct: 61  VSMNPAIDGDYYGIDPMGLLWSQKPVQAGRRDQFHADVMAPLETTLTVSALEQPGLPPCT 120

Query: 121 PASTRLVQRLAGAGVTRREVRELGLVGTLFLPATPGPHPAVMILNGSGGGINEPRAALYA 180
           PASTRLVQRLAGAGVTRREVRELGLVGTLFLPATPGPHPAVMILNGSGGGINEPRAALYA
Sbjct: 121 PASTRLVQRLAGAGVTRREVRELGLVGTLFLPATPGPHPAVMILNGSGGGINEPRAALYA 180

Query: 181 SRGYAAFALAYFKAPGLSDYISNTPLEYFERGLDWLRAEVRPLHDFVAISGQSRGGELVL 240
           SRGYAAFALAYFKAPGLSDYISNTPLEYFERGLDWLRAEV PLHDFVAISGQSRGGELVL
Sbjct: 181 SRGYAAFALAYFKAPGLSDYISNTPLEYFERGLDWLRAEVSPLHDFVAISGQSRGGELVL 240

Query: 241 LLGATFPQKVSAVLAYVPSALVHSGQNAADPAIGREGPTWLLRGQPLPHQWQDNRTASWA 300
           LLGATFPQKVSAVLAYVPSALVHSGQNAADP IGREGPTWLLRGQPLPHQWQDNRTASWA
Sbjct: 241 LLGATFPQKVSAVLAYVPSALVHSGQNAADPTIGREGPTWLLRGQPLPHQWQDNRTASWA 300

Query: 301 PFDEGPAPHRHELAMLTALQDEEAVARARIPVEKIAAPVLLLSATDDGSWPSSLYCGMVR 360
           PFDEGPAPHRHELAMLTALQDEEAVARARIPVEKIAAPVLLLSATDDGSWPSSLYCGMVR
Sbjct: 301 PFDEGPAPHRHELAMLTALQDEEAVARARIPVEKIAAPVLLLSATDDGSWPSSLYCGMVR 360

Query: 361 DKLAEVAHPWPVLWRNYANAGHSILFPFVPTTQTTYAHPVSGRISTGGGEAAANARADLD 420
           DKLAEVAHPWPVLWRNYANAGHSILFPFVPTTQTTYAHPVSGRISTGGGEAAANARADLD
Sbjct: 361 DKLAEVAHPWPVLWRNYANAGHSILFPFVPTTQTTYAHPVSGRISTGGGEAAANARADLD 420

Query: 421 SWQQAQHFLRDALTRHSSPKETS 443
           SWQQAQHFLRDALTRHSSPKETS
Sbjct: 421 SWQQAQHFLRDALTRHSSPKETS 443


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,651,583
Number of extensions: 77741
Number of successful extensions: 216
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,203,190
Effective search space: 427132450
Effective search space used: 427132450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)