BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0105.p
         (493 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310892|ref|YP_003774984.1| transmembrane oxidoreductase [H...   988   0.0  

>gi|300310892|ref|YP_003774984.1| transmembrane oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score =  988 bits (2554), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/496 (98%), Positives = 491/496 (98%), Gaps = 3/496 (0%)

Query: 1   MQDTEPTPTDAT---YAAPPQGLAALEARLRQDLQWLALPGKSWTPQIEREGVPVLDVAI 57
           MQDTEPTPTDAT   YAAPPQGLAALEARLRQDLQWLALPGKSWTPQIEREGVPVLDVAI
Sbjct: 1   MQDTEPTPTDATCATYAAPPQGLAALEARLRQDLQWLALPGKSWTPQIEREGVPVLDVAI 60

Query: 58  IGGGQAGMAASVALSHLGIPNVIYDQSPKDFEGPWATTARMETLRSPKTLTGPALGFPAL 117
           IGGGQAGMAASVALSHLGIPNVIYDQSPKDFEGPWATTARMETLRSPKTLTGPALGFPAL
Sbjct: 61  IGGGQAGMAASVALSHLGIPNVIYDQSPKDFEGPWATTARMETLRSPKTLTGPALGFPAL 120

Query: 118 TFRAWFEAQFGLAAWEALDKIPRLQWMDYLRWFRRVMQLDIRNEHRVLAVQPRADGIVAL 177
           TFRAWFEAQFGLAAWEALDKIPRLQWMDYLRWFRRVMQLDIRNEHRVLAVQPRADGIVAL
Sbjct: 121 TFRAWFEAQFGLAAWEALDKIPRLQWMDYLRWFRRVMQLDIRNEHRVLAVQPRADGIVAL 180

Query: 178 QLQSPSGPSTVLARRVVVATGRDGLGGAYLPPLAGQLPRDRWAHSSDLFDYASLKGKRVG 237
           QLQSPSG +TVLARRVVVATGRDGLGGAYLPPLAGQLPRDRWAHSSDLFDYASLKGKRVG
Sbjct: 181 QLQSPSGAATVLARRVVVATGRDGLGGAYLPPLAGQLPRDRWAHSSDLFDYASLKGKRVG 240

Query: 238 VIGGGASAMDSAATALEEGAARVDMLIRRKDLPRINKGKGSGSPGLVNGHLHLPDEWKWR 297
           VIGGGASAMDSAATALEEGAARVDMLIRRKDLPRINKGKGSGSPGLVNGHLHLPDEWKWR
Sbjct: 241 VIGGGASAMDSAATALEEGAARVDMLIRRKDLPRINKGKGSGSPGLVNGHLHLPDEWKWR 300

Query: 298 IRHYVNAQQVPPPSGSTRRVSRFANARFLLGTAIESVQIQPGGALLLHTNRGPLELDFLF 357
           IRHYVNAQQVPPPSGSTRRVSRFANARFLLGTAIESVQIQP GALLLHTNRGPLELDFLF
Sbjct: 301 IRHYVNAQQVPPPSGSTRRVSRFANARFLLGTAIESVQIQPDGALLLHTNRGPLELDFLF 360

Query: 358 FSTGFKIDWSLRREFKDIAPHILNWSDRYTPPAGEEDQELADSPYLGPVFEFQQKTPGSL 417
           FSTGFKIDWSLRREF+DIAPHILNWSDRYTPPAGEEDQELADSPYLGPVFEFQQKTPGSL
Sbjct: 361 FSTGFKIDWSLRREFRDIAPHILNWSDRYTPPAGEEDQELADSPYLGPVFEFQQKTPGSL 420

Query: 418 PGLERVHCFCYPAAASHGTVSGDIPAISDGAYRLAQGIAALMYSEDVEYHYRNIQAYEEP 477
           PGLERVHCFCYPAAASHGTVSGDIPAISDGAYRLAQGIAALMYSEDVEYHYRNIQAYEEP
Sbjct: 421 PGLERVHCFCYPAAASHGTVSGDIPAISDGAYRLAQGIAALMYSEDVEYHYRNIQAYEEP 480

Query: 478 ELEGDEWTESPWELPA 493
           ELEGDEWTESPWELPA
Sbjct: 481 ELEGDEWTESPWELPA 496


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,628,205
Number of extensions: 70431
Number of successful extensions: 220
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 404
Effective length of database: 1,198,455
Effective search space: 484175820
Effective search space used: 484175820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)