BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0102.p (336 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas... 666 0.0 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 308 5e-85 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 295 3e-81 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 185 4e-48 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 182 4e-47 >gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/336 (99%), Positives = 335/336 (99%) Query: 1 VIRIEQLHKTYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSG 60 +IRIEQLHKTYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSG Sbjct: 1 MIRIEQLHKTYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSG 60 Query: 61 RVLIDGEDITGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAA 120 RVLIDGEDITGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAA Sbjct: 61 RVLIDGEDITGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAA 120 Query: 121 RVDELLQLVGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSI 180 RVDELLQLVGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSI Sbjct: 121 RVDELLQLVGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSI 180 Query: 181 LRLLLEINRKLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHAVTRS 240 LRLLLEINRKLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHAVTRS Sbjct: 181 LRLLLEINRKLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHAVTRS 240 Query: 241 LLAQSHAWDAGESLYQRRPDGKLVRLTYAGDIAAQPILSQLTAATSALATIVRGTVSRIK 300 LL QSHAWDAGESLYQRRPDGKLVRLTYAGDIAAQPILSQLTAATSALATIVRGTVSRIK Sbjct: 241 LLTQSHAWDAGESLYQRRPDGKLVRLTYAGDIAAQPILSQLTAATSALATIVRGTVSRIK 300 Query: 301 DTPYGQLLVEFSGDADALAQVLDRLQTSDIEHEVLA 336 DTPYGQLLVEFSGDADALAQVLDRLQTSDIEHEVLA Sbjct: 301 DTPYGQLLVEFSGDADALAQVLDRLQTSDIEHEVLA 336 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 308 bits (788), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 165/328 (50%), Positives = 228/328 (69%), Gaps = 14/328 (4%) Query: 10 TYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSGRVLIDGEDI 69 T R G ++ A+R ++L I +GE+FGIIGRSGAGKSTL+RTLN+L RP SGR+++DG+D+ Sbjct: 8 TQRFG--NVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDL 65 Query: 70 TGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAARVDELLQLV 129 T L L R+ +GM+FQHFNLL++++V NI PL++ G+ S+ E AA+V+ LL+LV Sbjct: 66 TSLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGK-SKAEIAAKVEPLLELV 124 Query: 130 GLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSILRLLLEINR 189 GL A RD+YP+Q+SGGQKQRVGIARALAN P++LL DEATSALDPETT+SIL LL +IN+ Sbjct: 125 GLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINK 184 Query: 190 KLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHAVTRSLLAQSHAWD 249 +LGLTIVLITH+MEVI+ ICDRVAV++ G V EQG V+D+F +P+H VTR+L+ A + Sbjct: 185 ELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIGDVIAHE 244 Query: 250 AGESLYQR------RPDG-----KLVRLTYAGDIAAQPILSQLTAATSALATIVRGTVSR 298 + + R R D L R + G+ QP LS+ + I+ G + Sbjct: 245 LPKGVLARLRERLARADAGQGTDHLFRFAFTGNDVDQPHLSEAVRRFNLDFNILHGQIDE 304 Query: 299 IKDTPYGQLLVEFSGDADALAQVLDRLQ 326 I+ +G L + +G D + Q + L+ Sbjct: 305 IQGQAFGSLAILANGTQDNINQAMQYLR 332 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 295 bits (755), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 167/315 (53%), Positives = 215/315 (68%), Gaps = 8/315 (2%) Query: 9 KTYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSGRVLIDGED 68 KTY + + AL+DI+L+IA G +FGIIGRSGAGKS+L+RT+N LERP SGRV +D D Sbjct: 46 KTYVSAAGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVD 105 Query: 69 ITGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAARVDELLQL 128 + L L+ LR+R+GM+FQHFNLL AKTV NI PL++ G R + RV ELL L Sbjct: 106 LATLDETQLVALRRRIGMIFQHFNLLAAKTVFDNIALPLRVAG-VPRAQITQRVHELLAL 164 Query: 129 VGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSILRLLLEIN 188 VGL D YP +LSGGQKQRVGIARALA+ P +LLCDEATSALDPETTQSIL+LL +IN Sbjct: 165 VGLQDKADSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDIN 224 Query: 189 RKLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHAVTRSLLA---QS 245 RKLG+TI+LITHEM VIR I DRV VL+ G VAE G V +F +PQHA TR+LLA Sbjct: 225 RKLGITIILITHEMSVIREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRALLAPLQHG 284 Query: 246 HAWDAGESLYQRRPDG---KLVRLTYAGDIAAQPILSQLTAATSALATIVRGTVSRIKDT 302 + ++L + P G ++++L + G QP L ++ A +++ V I+ Sbjct: 285 LPQELQQALQPQAPAGRHERVLQLEFHGGDGLQPDLQRIAAVLGGRVRVLQAGVDHIQGH 344 Query: 303 PYGQLLVEFSGDADA 317 +GQL++ + DA A Sbjct: 345 THGQLVLAVA-DAPA 358 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 185 bits (470), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 100/236 (42%), Positives = 149/236 (63%), Gaps = 5/236 (2%) Query: 1 VIRIEQLHKTYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSG 60 +++I+ LHK++ + + L ++LD+ +G++ IIG+SG+GKSTL+R LN LE+ D+G Sbjct: 4 IVKIKDLHKSFGSNK----VLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAG 59 Query: 61 RVLIDGEDITGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAA 120 + + G DI L LR++VG+VFQ +NL TV +NI L + S E+ Sbjct: 60 DIQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKT 119 Query: 121 RVDELLQLVGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSI 180 ++LQLVGL+ +D YP QLSGGQ QRV IAR+LA P L+L DE TSALDPE T + Sbjct: 120 IAHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEV 179 Query: 181 LRLLLEINRKLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHA 236 L+++ ++ R G+T+VL+THEM R + D + + G V E G ++F P+ A Sbjct: 180 LKVMEDLARG-GMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTA 234 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 182 bits (461), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 101/243 (41%), Positives = 145/243 (59%), Gaps = 6/243 (2%) Query: 1 VIRIEQLHKTYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSG 60 ++ I + K + + Q L I+L + +G+V IIGRSG+GKST++R +N LE D G Sbjct: 3 IVEINNITKRFGSNQ----VLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGG 58 Query: 61 RVLIDGEDITGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAA 120 + + G +T HE L+ LR+ VGMVFQH+NL TV +NI +I + + E Sbjct: 59 SITVAGHKLTH-KHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARE 117 Query: 121 RVDELLQLVGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSI 180 ++L+ VGLD RD YP QLSGGQ+QRV IAR+LA P+++L DE TSALDPE T + Sbjct: 118 TAIKVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEV 177 Query: 181 LRLLLEINRKLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHAVTRS 240 L+++ E+ R G+T++L+THEME R + D + G V E + F PQ R Sbjct: 178 LKVMEELARG-GMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQ 236 Query: 241 LLA 243 + Sbjct: 237 FIG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,018,864 Number of extensions: 42636 Number of successful extensions: 582 Number of sequences better than 1.0e-08: 134 Number of HSP's gapped: 354 Number of HSP's successfully gapped: 150 Length of query: 336 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 250 Effective length of database: 1,212,660 Effective search space: 303165000 Effective search space used: 303165000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)